Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23980

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23960 and PGA1_c23970 are separated by 102 nucleotidesPGA1_c23970 and PGA1_c23980 are separated by 89 nucleotidesPGA1_c23980 and PGA1_c23990 are separated by 216 nucleotidesPGA1_c23990 and PGA1_c24000 are separated by 188 nucleotides PGA1_c23960: PGA1_c23960 - tRNA-modifying protein ygfZ-like protein, at 2,501,979 to 2,502,719 _c23960 PGA1_c23970: PGA1_c23970 - hypothetical protein, at 2,502,822 to 2,503,391 _c23970 PGA1_c23980: PGA1_c23980 - translation elongation factor P, at 2,503,481 to 2,504,044 _c23980 PGA1_c23990: PGA1_c23990 - hypothetical protein, at 2,504,261 to 2,504,578 _c23990 PGA1_c24000: PGA1_c24000 - cobyric acid synthase CobQ, at 2,504,767 to 2,506,227 _c24000 Position (kb) 2503 2504 2505Strain fitness (log2 ratio) -2 -1 0 1at 2502.520 kb on - strand, within PGA1_c23960at 2502.707 kb on + strandat 2502.708 kb on + strandat 2502.708 kb on + strandat 2502.833 kb on + strandat 2502.846 kb on - strandat 2502.891 kb on + strand, within PGA1_c23970at 2502.899 kb on - strand, within PGA1_c23970at 2502.909 kb on - strand, within PGA1_c23970at 2502.928 kb on - strand, within PGA1_c23970at 2503.049 kb on + strand, within PGA1_c23970at 2503.072 kb on + strand, within PGA1_c23970at 2503.082 kb on + strand, within PGA1_c23970at 2503.090 kb on - strand, within PGA1_c23970at 2503.092 kb on + strand, within PGA1_c23970at 2503.290 kb on - strand, within PGA1_c23970at 2503.354 kb on + strandat 2503.354 kb on + strandat 2503.354 kb on + strandat 2503.362 kb on - strandat 2503.485 kb on - strandat 2503.596 kb on - strand, within PGA1_c23980at 2503.615 kb on - strand, within PGA1_c23980at 2503.751 kb on - strand, within PGA1_c23980at 2503.779 kb on - strand, within PGA1_c23980at 2503.950 kb on + strand, within PGA1_c23980at 2504.563 kb on + strandat 2504.577 kb on + strandat 2504.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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2,502,520 - PGA1_c23960 0.73 +0.6
2,502,707 + +0.6
2,502,708 + -0.6
2,502,708 + -0.6
2,502,833 + -1.3
2,502,846 - +0.4
2,502,891 + PGA1_c23970 0.12 -0.6
2,502,899 - PGA1_c23970 0.14 -0.2
2,502,909 - PGA1_c23970 0.15 +0.2
2,502,928 - PGA1_c23970 0.19 +0.3
2,503,049 + PGA1_c23970 0.40 +0.6
2,503,072 + PGA1_c23970 0.44 -2.4
2,503,082 + PGA1_c23970 0.46 +0.2
2,503,090 - PGA1_c23970 0.47 -0.1
2,503,092 + PGA1_c23970 0.47 +0.1
2,503,290 - PGA1_c23970 0.82 -2.1
2,503,354 + -0.7
2,503,354 + -2.2
2,503,354 + -0.3
2,503,362 - +0.1
2,503,485 - -0.5
2,503,596 - PGA1_c23980 0.20 -2.1
2,503,615 - PGA1_c23980 0.24 +0.9
2,503,751 - PGA1_c23980 0.48 +1.1
2,503,779 - PGA1_c23980 0.53 -0.4
2,503,950 + PGA1_c23980 0.83 +1.1
2,504,563 + +0.7
2,504,577 + -0.1
2,504,601 + -0.4

Or see this region's nucleotide sequence