Strain Fitness in Marinobacter adhaerens HP15 around HP15_1935

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1934 and HP15_1935 are separated by 383 nucleotidesHP15_1935 and HP15_1936 are separated by 16 nucleotidesHP15_1936 and HP15_1937 are separated by 135 nucleotides HP15_1934: HP15_1934 - periplasmic glucan biosynthesis protein MdoG, at 2,053,108 to 2,054,694 _1934 HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914 _1935 HP15_1936: HP15_1936 - conserved hypothetical protein, at 2,055,931 to 2,056,173 _1936 HP15_1937: HP15_1937 - protein containing bacterial bifunctional deaminase-reductase, C-terminal domain, at 2,056,309 to 2,057,181 _1937 Position (kb) 2055 2056Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2054.149 kb on + strand, within HP15_1934at 2054.204 kb on + strand, within HP15_1934at 2054.382 kb on + strand, within HP15_1934at 2054.444 kb on + strand, within HP15_1934at 2054.545 kb on + strandat 2054.643 kb on + strandat 2054.669 kb on + strandat 2054.856 kb on + strandat 2054.864 kb on - strandat 2054.911 kb on + strandat 2056.089 kb on - strand, within HP15_1936at 2056.275 kb on + strandat 2056.299 kb on - strandat 2056.321 kb on + strandat 2056.321 kb on + strandat 2056.728 kb on - strand, within HP15_1937at 2056.730 kb on - strand, within HP15_1937at 2056.772 kb on + strand, within HP15_1937at 2056.779 kb on + strand, within HP15_1937at 2056.851 kb on + strand, within HP15_1937at 2056.864 kb on - strand, within HP15_1937at 2056.864 kb on - strand, within HP15_1937at 2056.864 kb on - strand, within HP15_1937

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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2,054,149 + HP15_1934 0.66 +0.1
2,054,204 + HP15_1934 0.69 -1.0
2,054,382 + HP15_1934 0.80 +1.0
2,054,444 + HP15_1934 0.84 +3.0
2,054,545 + -0.2
2,054,643 + -0.5
2,054,669 + -0.1
2,054,856 + -0.0
2,054,864 - -0.7
2,054,911 + +0.6
2,056,089 - HP15_1936 0.65 +1.0
2,056,275 + -1.4
2,056,299 - -0.2
2,056,321 + -0.0
2,056,321 + +0.6
2,056,728 - HP15_1937 0.48 -0.6
2,056,730 - HP15_1937 0.48 -0.2
2,056,772 + HP15_1937 0.53 -0.9
2,056,779 + HP15_1937 0.54 +0.5
2,056,851 + HP15_1937 0.62 -3.2
2,056,864 - HP15_1937 0.64 -0.6
2,056,864 - HP15_1937 0.64 -0.4
2,056,864 - HP15_1937 0.64 -0.6

Or see this region's nucleotide sequence