Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17250 and PGA1_c17260 are separated by 101 nucleotides PGA1_c17260 and PGA1_c17270 are separated by 71 nucleotides PGA1_c17270 and PGA1_c17280 are separated by 142 nucleotides
PGA1_c17250: PGA1_c17250 - glyceraldehyde-3-phosphate dehydrogenase 2, at 1,801,467 to 1,802,468
_c17250
PGA1_c17260: PGA1_c17260 - hypothetical protein, at 1,802,570 to 1,802,713
_c17260
PGA1_c17270: PGA1_c17270 - phosphopantetheine adenylyltransferase CoaA, at 1,802,785 to 1,803,279
_c17270
PGA1_c17280: PGA1_c17280 - cystathionine beta-synthase-like protein, at 1,803,422 to 1,803,856
_c17280
Position (kb)
1802
1803 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1801.670 kb on + strand, within PGA1_c17250 at 1801.716 kb on + strand, within PGA1_c17250 at 1801.724 kb on - strand, within PGA1_c17250 at 1801.751 kb on - strand, within PGA1_c17250 at 1801.790 kb on - strand, within PGA1_c17250 at 1801.795 kb on - strand, within PGA1_c17250 at 1801.806 kb on + strand, within PGA1_c17250 at 1801.823 kb on - strand, within PGA1_c17250 at 1801.823 kb on - strand, within PGA1_c17250 at 1801.850 kb on + strand, within PGA1_c17250 at 1801.925 kb on + strand, within PGA1_c17250 at 1801.943 kb on + strand, within PGA1_c17250 at 1802.064 kb on + strand, within PGA1_c17250 at 1802.111 kb on + strand, within PGA1_c17250 at 1802.335 kb on + strand, within PGA1_c17250 at 1802.352 kb on + strand, within PGA1_c17250 at 1802.360 kb on - strand, within PGA1_c17250 at 1802.360 kb on - strand, within PGA1_c17250 at 1802.360 kb on - strand, within PGA1_c17250 at 1802.414 kb on + strand at 1802.470 kb on - strand at 1802.471 kb on - strand at 1802.493 kb on + strand at 1802.519 kb on - strand at 1802.530 kb on + strand at 1802.588 kb on - strand, within PGA1_c17260 at 1802.608 kb on - strand, within PGA1_c17260 at 1802.680 kb on - strand, within PGA1_c17260 at 1803.344 kb on - strand at 1803.363 kb on + strand at 1803.391 kb on - strand at 1803.396 kb on + strand at 1803.437 kb on - strand at 1803.485 kb on + strand, within PGA1_c17280 at 1803.506 kb on + strand, within PGA1_c17280 at 1803.606 kb on + strand, within PGA1_c17280 at 1803.606 kb on - strand, within PGA1_c17280 at 1803.632 kb on - strand, within PGA1_c17280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 1,801,670 + PGA1_c17250 0.20 +2.1 1,801,716 + PGA1_c17250 0.25 +0.0 1,801,724 - PGA1_c17250 0.26 +1.4 1,801,751 - PGA1_c17250 0.28 -0.3 1,801,790 - PGA1_c17250 0.32 +0.7 1,801,795 - PGA1_c17250 0.33 +0.2 1,801,806 + PGA1_c17250 0.34 -0.2 1,801,823 - PGA1_c17250 0.36 +1.8 1,801,823 - PGA1_c17250 0.36 +0.7 1,801,850 + PGA1_c17250 0.38 -0.6 1,801,925 + PGA1_c17250 0.46 +0.1 1,801,943 + PGA1_c17250 0.48 -0.2 1,802,064 + PGA1_c17250 0.60 -0.7 1,802,111 + PGA1_c17250 0.64 +0.2 1,802,335 + PGA1_c17250 0.87 -2.8 1,802,352 + PGA1_c17250 0.88 +0.6 1,802,360 - PGA1_c17250 0.89 -0.7 1,802,360 - PGA1_c17250 0.89 -0.5 1,802,360 - PGA1_c17250 0.89 -0.1 1,802,414 + +0.8 1,802,470 - +0.5 1,802,471 - -1.1 1,802,493 + -2.3 1,802,519 - +0.5 1,802,530 + -2.5 1,802,588 - PGA1_c17260 0.12 +0.3 1,802,608 - PGA1_c17260 0.26 +0.5 1,802,680 - PGA1_c17260 0.76 +0.5 1,803,344 - -0.1 1,803,363 + +0.2 1,803,391 - +0.6 1,803,396 + +0.7 1,803,437 - -1.9 1,803,485 + PGA1_c17280 0.14 +1.5 1,803,506 + PGA1_c17280 0.19 -2.1 1,803,606 + PGA1_c17280 0.42 +0.7 1,803,606 - PGA1_c17280 0.42 -0.9 1,803,632 - PGA1_c17280 0.48 -1.7
Or see this region's nucleotide sequence