Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1633 and HP15_1634 are separated by 1 nucleotides HP15_1634 and HP15_1635 are separated by 313 nucleotides
HP15_1633: HP15_1633 - 2-oxoisovalerate dehydrogenase, E1 component, beta subunit, at 1,732,327 to 1,733,304
_1633
HP15_1634: HP15_1634 - branched-chain alpha-keto acid dehydrogenase complex E1 alpha subunit, at 1,733,306 to 1,734,454
_1634
HP15_1635: HP15_1635 - malate:quinone oxidoreductase, at 1,734,768 to 1,736,204
_1635
Position (kb)
1733
1734
1735 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1732.308 kb on + strand at 1732.308 kb on + strand at 1732.308 kb on + strand at 1732.315 kb on + strand at 1732.316 kb on - strand at 1732.323 kb on - strand at 1732.369 kb on - strand at 1732.417 kb on - strand at 1732.549 kb on - strand, within HP15_1633 at 1732.675 kb on + strand, within HP15_1633 at 1732.690 kb on + strand, within HP15_1633 at 1732.744 kb on + strand, within HP15_1633 at 1732.818 kb on - strand, within HP15_1633 at 1732.950 kb on + strand, within HP15_1633 at 1732.973 kb on + strand, within HP15_1633 at 1733.302 kb on - strand at 1733.406 kb on - strand at 1733.572 kb on + strand, within HP15_1634 at 1733.690 kb on + strand, within HP15_1634 at 1733.785 kb on - strand, within HP15_1634 at 1733.797 kb on + strand, within HP15_1634 at 1733.797 kb on + strand, within HP15_1634 at 1733.900 kb on + strand, within HP15_1634 at 1733.900 kb on + strand, within HP15_1634 at 1733.900 kb on + strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1734.187 kb on - strand, within HP15_1634 at 1734.254 kb on - strand, within HP15_1634 at 1734.275 kb on + strand, within HP15_1634 at 1734.359 kb on + strand at 1734.389 kb on - strand at 1734.770 kb on - strand at 1734.816 kb on - strand at 1734.882 kb on - strand at 1734.941 kb on + strand, within HP15_1635 at 1735.022 kb on + strand, within HP15_1635 at 1735.022 kb on + strand, within HP15_1635 at 1735.030 kb on - strand, within HP15_1635 at 1735.030 kb on - strand, within HP15_1635 at 1735.222 kb on + strand, within HP15_1635 at 1735.410 kb on + strand, within HP15_1635
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 1,732,308 + -1.8 1,732,308 + -3.0 1,732,308 + -1.4 1,732,315 + -1.3 1,732,316 - -0.3 1,732,323 - -0.5 1,732,369 - -1.2 1,732,417 - -2.2 1,732,549 - HP15_1633 0.23 -1.4 1,732,675 + HP15_1633 0.36 -1.0 1,732,690 + HP15_1633 0.37 -1.2 1,732,744 + HP15_1633 0.43 -0.5 1,732,818 - HP15_1633 0.50 -2.9 1,732,950 + HP15_1633 0.64 -1.4 1,732,973 + HP15_1633 0.66 -0.8 1,733,302 - +0.2 1,733,406 - -1.3 1,733,572 + HP15_1634 0.23 -0.6 1,733,690 + HP15_1634 0.33 -1.6 1,733,785 - HP15_1634 0.42 +0.6 1,733,797 + HP15_1634 0.43 -0.6 1,733,797 + HP15_1634 0.43 -1.0 1,733,900 + HP15_1634 0.52 -0.3 1,733,900 + HP15_1634 0.52 -1.6 1,733,900 + HP15_1634 0.52 -1.0 1,733,908 - HP15_1634 0.52 -1.5 1,733,908 - HP15_1634 0.52 -1.5 1,733,908 - HP15_1634 0.52 -1.9 1,733,908 - HP15_1634 0.52 -0.6 1,734,187 - HP15_1634 0.77 -1.6 1,734,254 - HP15_1634 0.83 +0.3 1,734,275 + HP15_1634 0.84 -2.8 1,734,359 + -1.8 1,734,389 - -1.3 1,734,770 - +0.0 1,734,816 - +0.3 1,734,882 - -1.3 1,734,941 + HP15_1635 0.12 -1.9 1,735,022 + HP15_1635 0.18 +1.4 1,735,022 + HP15_1635 0.18 -0.5 1,735,030 - HP15_1635 0.18 +0.6 1,735,030 - HP15_1635 0.18 +0.6 1,735,222 + HP15_1635 0.32 -0.6 1,735,410 + HP15_1635 0.45 -0.1
Or see this region's nucleotide sequence