Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11810

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11800 and PGA1_c11810 are separated by 301 nucleotidesPGA1_c11810 and PGA1_c11820 are separated by 30 nucleotidesPGA1_c11820 and PGA1_c11830 are separated by 144 nucleotides PGA1_c11800: PGA1_c11800 - chemoreceptor McpA, at 1,224,471 to 1,225,844 _c11800 PGA1_c11810: PGA1_c11810 - hypothetical protein, at 1,226,146 to 1,226,328 _c11810 PGA1_c11820: PGA1_c11820 - putative esterase, at 1,226,359 to 1,227,117 _c11820 PGA1_c11830: PGA1_c11830 - hypothetical protein, at 1,227,262 to 1,227,627 _c11830 Position (kb) 1226 1227Strain fitness (log2 ratio) -2 -1 0 1 2at 1225.148 kb on + strand, within PGA1_c11800at 1225.148 kb on + strand, within PGA1_c11800at 1225.148 kb on + strand, within PGA1_c11800at 1225.151 kb on - strand, within PGA1_c11800at 1225.156 kb on - strand, within PGA1_c11800at 1225.188 kb on + strand, within PGA1_c11800at 1225.194 kb on - strand, within PGA1_c11800at 1225.196 kb on - strand, within PGA1_c11800at 1225.196 kb on - strand, within PGA1_c11800at 1225.219 kb on + strand, within PGA1_c11800at 1225.227 kb on - strand, within PGA1_c11800at 1225.239 kb on + strand, within PGA1_c11800at 1225.287 kb on + strand, within PGA1_c11800at 1225.309 kb on - strand, within PGA1_c11800at 1225.368 kb on - strand, within PGA1_c11800at 1225.380 kb on + strand, within PGA1_c11800at 1225.380 kb on + strand, within PGA1_c11800at 1225.388 kb on - strand, within PGA1_c11800at 1225.467 kb on - strand, within PGA1_c11800at 1225.512 kb on + strand, within PGA1_c11800at 1225.520 kb on - strand, within PGA1_c11800at 1225.556 kb on + strand, within PGA1_c11800at 1225.611 kb on + strand, within PGA1_c11800at 1225.618 kb on + strand, within PGA1_c11800at 1225.626 kb on - strand, within PGA1_c11800at 1225.628 kb on + strand, within PGA1_c11800at 1225.628 kb on + strand, within PGA1_c11800at 1225.628 kb on + strand, within PGA1_c11800at 1225.636 kb on - strand, within PGA1_c11800at 1225.657 kb on + strand, within PGA1_c11800at 1225.685 kb on - strand, within PGA1_c11800at 1225.705 kb on + strand, within PGA1_c11800at 1225.713 kb on - strandat 1225.713 kb on - strandat 1225.726 kb on + strandat 1225.731 kb on + strandat 1225.734 kb on - strandat 1225.739 kb on - strandat 1225.781 kb on + strandat 1225.817 kb on + strandat 1225.817 kb on + strandat 1225.817 kb on + strandat 1225.817 kb on + strandat 1225.817 kb on + strandat 1225.819 kb on + strandat 1225.819 kb on + strandat 1225.825 kb on + strandat 1225.825 kb on - strandat 1225.827 kb on - strandat 1225.827 kb on - strandat 1225.835 kb on - strandat 1225.875 kb on - strandat 1225.875 kb on - strandat 1225.911 kb on - strandat 1225.938 kb on - strandat 1226.043 kb on + strandat 1226.043 kb on + strandat 1226.043 kb on + strandat 1226.043 kb on + strandat 1226.051 kb on - strandat 1226.054 kb on + strandat 1226.072 kb on - strandat 1226.072 kb on - strandat 1226.109 kb on + strandat 1226.118 kb on - strandat 1226.125 kb on + strandat 1226.128 kb on - strandat 1226.133 kb on - strandat 1226.133 kb on - strandat 1226.133 kb on - strandat 1226.133 kb on - strandat 1226.133 kb on - strandat 1226.133 kb on - strandat 1226.133 kb on - strandat 1226.151 kb on - strandat 1226.197 kb on - strand, within PGA1_c11810at 1226.215 kb on + strand, within PGA1_c11810at 1226.292 kb on + strand, within PGA1_c11810at 1226.355 kb on + strandat 1226.411 kb on + strandat 1226.466 kb on - strand, within PGA1_c11820at 1226.468 kb on + strand, within PGA1_c11820at 1226.476 kb on - strand, within PGA1_c11820at 1226.476 kb on - strand, within PGA1_c11820at 1226.476 kb on - strand, within PGA1_c11820at 1226.531 kb on - strand, within PGA1_c11820at 1226.597 kb on - strand, within PGA1_c11820at 1226.598 kb on + strand, within PGA1_c11820at 1226.599 kb on + strand, within PGA1_c11820at 1226.605 kb on - strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.631 kb on + strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.639 kb on - strand, within PGA1_c11820at 1226.749 kb on + strand, within PGA1_c11820at 1226.752 kb on - strand, within PGA1_c11820at 1226.890 kb on + strand, within PGA1_c11820at 1226.900 kb on + strand, within PGA1_c11820at 1226.951 kb on + strand, within PGA1_c11820at 1226.970 kb on + strand, within PGA1_c11820at 1227.005 kb on + strand, within PGA1_c11820at 1227.052 kb on - strandat 1227.054 kb on + strandat 1227.079 kb on - strandat 1227.153 kb on - strandat 1227.207 kb on - strandat 1227.208 kb on - strandat 1227.230 kb on - strandat 1227.256 kb on - strandat 1227.303 kb on + strand, within PGA1_c11830

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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1,225,148 + PGA1_c11800 0.49 -0.1
1,225,148 + PGA1_c11800 0.49 +0.5
1,225,148 + PGA1_c11800 0.49 +1.3
1,225,151 - PGA1_c11800 0.49 +0.4
1,225,156 - PGA1_c11800 0.50 -0.2
1,225,188 + PGA1_c11800 0.52 +0.1
1,225,194 - PGA1_c11800 0.53 +1.4
1,225,196 - PGA1_c11800 0.53 -2.7
1,225,196 - PGA1_c11800 0.53 +0.1
1,225,219 + PGA1_c11800 0.54 -1.3
1,225,227 - PGA1_c11800 0.55 +1.1
1,225,239 + PGA1_c11800 0.56 -0.8
1,225,287 + PGA1_c11800 0.59 +1.5
1,225,309 - PGA1_c11800 0.61 +0.9
1,225,368 - PGA1_c11800 0.65 +0.4
1,225,380 + PGA1_c11800 0.66 +0.8
1,225,380 + PGA1_c11800 0.66 -0.1
1,225,388 - PGA1_c11800 0.67 +0.1
1,225,467 - PGA1_c11800 0.72 +0.2
1,225,512 + PGA1_c11800 0.76 +0.8
1,225,520 - PGA1_c11800 0.76 +0.5
1,225,556 + PGA1_c11800 0.79 +0.3
1,225,611 + PGA1_c11800 0.83 -0.1
1,225,618 + PGA1_c11800 0.83 -0.5
1,225,626 - PGA1_c11800 0.84 -1.3
1,225,628 + PGA1_c11800 0.84 -0.6
1,225,628 + PGA1_c11800 0.84 -0.4
1,225,628 + PGA1_c11800 0.84 +0.4
1,225,636 - PGA1_c11800 0.85 -0.6
1,225,657 + PGA1_c11800 0.86 +0.5
1,225,685 - PGA1_c11800 0.88 -1.2
1,225,705 + PGA1_c11800 0.90 +0.8
1,225,713 - +0.9
1,225,713 - +0.4
1,225,726 + +0.2
1,225,731 + -1.3
1,225,734 - +0.5
1,225,739 - +0.3
1,225,781 + +1.0
1,225,817 + +0.6
1,225,817 + +0.7
1,225,817 + +0.4
1,225,817 + -0.5
1,225,817 + -0.7
1,225,819 + +0.9
1,225,819 + +0.8
1,225,825 + -0.6
1,225,825 - +0.5
1,225,827 - -0.6
1,225,827 - -0.5
1,225,835 - -0.5
1,225,875 - +1.2
1,225,875 - -1.4
1,225,911 - +1.5
1,225,938 - +0.5
1,226,043 + -0.2
1,226,043 + -0.9
1,226,043 + +1.0
1,226,043 + -0.6
1,226,051 - +0.5
1,226,054 + -0.1
1,226,072 - +0.2
1,226,072 - -0.5
1,226,109 + +0.1
1,226,118 - +0.8
1,226,125 + +0.5
1,226,128 - +0.4
1,226,133 - +0.7
1,226,133 - -0.2
1,226,133 - -0.3
1,226,133 - +1.3
1,226,133 - -0.6
1,226,133 - -0.1
1,226,133 - -0.8
1,226,151 - +0.2
1,226,197 - PGA1_c11810 0.28 -0.6
1,226,215 + PGA1_c11810 0.38 +0.3
1,226,292 + PGA1_c11810 0.80 +2.2
1,226,355 + -1.1
1,226,411 + +0.4
1,226,466 - PGA1_c11820 0.14 +1.4
1,226,468 + PGA1_c11820 0.14 +0.7
1,226,476 - PGA1_c11820 0.15 +0.9
1,226,476 - PGA1_c11820 0.15 -0.9
1,226,476 - PGA1_c11820 0.15 -0.1
1,226,531 - PGA1_c11820 0.23 -0.3
1,226,597 - PGA1_c11820 0.31 -1.4
1,226,598 + PGA1_c11820 0.31 -0.3
1,226,599 + PGA1_c11820 0.32 -0.5
1,226,605 - PGA1_c11820 0.32 -0.7
1,226,631 + PGA1_c11820 0.36 -2.6
1,226,631 + PGA1_c11820 0.36 +1.1
1,226,631 + PGA1_c11820 0.36 -1.1
1,226,631 + PGA1_c11820 0.36 -0.2
1,226,631 + PGA1_c11820 0.36 +0.5
1,226,631 + PGA1_c11820 0.36 -0.9
1,226,631 + PGA1_c11820 0.36 -0.2
1,226,631 + PGA1_c11820 0.36 +1.4
1,226,631 + PGA1_c11820 0.36 -0.3
1,226,631 + PGA1_c11820 0.36 -0.2
1,226,631 + PGA1_c11820 0.36 +0.5
1,226,631 + PGA1_c11820 0.36 -0.6
1,226,631 + PGA1_c11820 0.36 -1.0
1,226,631 + PGA1_c11820 0.36 +0.5
1,226,631 + PGA1_c11820 0.36 -1.3
1,226,639 - PGA1_c11820 0.37 +1.0
1,226,639 - PGA1_c11820 0.37 +0.2
1,226,639 - PGA1_c11820 0.37 +1.3
1,226,639 - PGA1_c11820 0.37 +1.1
1,226,639 - PGA1_c11820 0.37 +0.5
1,226,639 - PGA1_c11820 0.37 +0.6
1,226,639 - PGA1_c11820 0.37 -0.8
1,226,639 - PGA1_c11820 0.37 -0.4
1,226,749 + PGA1_c11820 0.51 -1.0
1,226,752 - PGA1_c11820 0.52 -2.6
1,226,890 + PGA1_c11820 0.70 -0.4
1,226,900 + PGA1_c11820 0.71 +0.2
1,226,951 + PGA1_c11820 0.78 +0.3
1,226,970 + PGA1_c11820 0.81 +0.8
1,227,005 + PGA1_c11820 0.85 +0.3
1,227,052 - -0.7
1,227,054 + +0.9
1,227,079 - +0.2
1,227,153 - -0.3
1,227,207 - +0.5
1,227,208 - -0.9
1,227,230 - +0.2
1,227,256 - -0.1
1,227,303 + PGA1_c11830 0.11 -1.1

Or see this region's nucleotide sequence