Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06680

Experiment: formate McAA riboflavin dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06675 and MMP_RS06680 are separated by 23 nucleotidesMMP_RS06680 and MMP_RS06685 are separated by 35 nucleotides MMP_RS06675: MMP_RS06675 - ADP-specific phosphofructokinase, at 1,281,207 to 1,282,598 _RS06675 MMP_RS06680: MMP_RS06680 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 1,282,622 to 1,283,785 _RS06680 MMP_RS06685: MMP_RS06685 - formate dehydrogenase H subunit alpha selenocysteine-containing, at 1,283,821 to 1,285,845 _RS06685 Position (kb) 1282 1283 1284Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1281.949 kb on - strand, within MMP_RS06675at 1282.241 kb on - strand, within MMP_RS06675at 1282.242 kb on + strand, within MMP_RS06675at 1282.256 kb on + strand, within MMP_RS06675at 1282.256 kb on + strand, within MMP_RS06675at 1282.261 kb on + strand, within MMP_RS06675at 1282.261 kb on + strand, within MMP_RS06675at 1282.261 kb on + strand, within MMP_RS06675at 1282.337 kb on - strand, within MMP_RS06675at 1282.396 kb on - strand, within MMP_RS06675at 1282.403 kb on - strand, within MMP_RS06675at 1282.407 kb on + strand, within MMP_RS06675at 1282.424 kb on + strand, within MMP_RS06675at 1282.535 kb on - strandat 1282.558 kb on - strandat 1282.563 kb on - strandat 1282.600 kb on - strandat 1282.747 kb on - strand, within MMP_RS06680at 1282.754 kb on - strand, within MMP_RS06680at 1282.754 kb on - strand, within MMP_RS06680at 1282.867 kb on - strand, within MMP_RS06680at 1282.901 kb on - strand, within MMP_RS06680at 1282.901 kb on - strand, within MMP_RS06680at 1282.901 kb on - strand, within MMP_RS06680at 1282.901 kb on - strand, within MMP_RS06680at 1282.902 kb on + strand, within MMP_RS06680at 1282.928 kb on + strand, within MMP_RS06680at 1283.339 kb on - strand, within MMP_RS06680at 1283.364 kb on - strand, within MMP_RS06680at 1283.432 kb on + strand, within MMP_RS06680at 1283.432 kb on + strand, within MMP_RS06680at 1283.432 kb on + strand, within MMP_RS06680at 1283.433 kb on - strand, within MMP_RS06680at 1283.435 kb on - strand, within MMP_RS06680at 1283.435 kb on - strand, within MMP_RS06680at 1283.435 kb on - strand, within MMP_RS06680at 1283.435 kb on - strand, within MMP_RS06680at 1283.436 kb on + strand, within MMP_RS06680at 1283.436 kb on + strand, within MMP_RS06680at 1283.528 kb on - strand, within MMP_RS06680at 1283.742 kb on + strandat 1283.788 kb on - strandat 1283.977 kb on - strandat 1284.238 kb on - strand, within MMP_RS06685at 1284.559 kb on - strand, within MMP_RS06685at 1284.638 kb on + strand, within MMP_RS06685at 1284.686 kb on - strand, within MMP_RS06685at 1284.762 kb on - strand, within MMP_RS06685at 1284.763 kb on + strand, within MMP_RS06685

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA riboflavin dropout
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1,281,949 - MMP_RS06675 0.53 -0.7
1,282,241 - MMP_RS06675 0.74 -0.7
1,282,242 + MMP_RS06675 0.74 -0.7
1,282,256 + MMP_RS06675 0.75 +0.6
1,282,256 + MMP_RS06675 0.75 +0.6
1,282,261 + MMP_RS06675 0.76 -0.7
1,282,261 + MMP_RS06675 0.76 -1.2
1,282,261 + MMP_RS06675 0.76 -0.6
1,282,337 - MMP_RS06675 0.81 -0.7
1,282,396 - MMP_RS06675 0.85 -0.5
1,282,403 - MMP_RS06675 0.86 +0.2
1,282,407 + MMP_RS06675 0.86 -0.3
1,282,424 + MMP_RS06675 0.87 -0.0
1,282,535 - -1.0
1,282,558 - -0.4
1,282,563 - -0.2
1,282,600 - -0.1
1,282,747 - MMP_RS06680 0.11 -4.1
1,282,754 - MMP_RS06680 0.11 -4.4
1,282,754 - MMP_RS06680 0.11 -3.0
1,282,867 - MMP_RS06680 0.21 -2.8
1,282,901 - MMP_RS06680 0.24 -4.5
1,282,901 - MMP_RS06680 0.24 -4.7
1,282,901 - MMP_RS06680 0.24 -2.9
1,282,901 - MMP_RS06680 0.24 -4.5
1,282,902 + MMP_RS06680 0.24 -4.2
1,282,928 + MMP_RS06680 0.26 -4.6
1,283,339 - MMP_RS06680 0.62 -3.9
1,283,364 - MMP_RS06680 0.64 -2.2
1,283,432 + MMP_RS06680 0.70 -3.7
1,283,432 + MMP_RS06680 0.70 -4.3
1,283,432 + MMP_RS06680 0.70 -3.5
1,283,433 - MMP_RS06680 0.70 -3.0
1,283,435 - MMP_RS06680 0.70 -3.7
1,283,435 - MMP_RS06680 0.70 -3.0
1,283,435 - MMP_RS06680 0.70 -4.4
1,283,435 - MMP_RS06680 0.70 -3.7
1,283,436 + MMP_RS06680 0.70 -4.9
1,283,436 + MMP_RS06680 0.70 -5.5
1,283,528 - MMP_RS06680 0.78 -5.4
1,283,742 + -3.6
1,283,788 - -4.8
1,283,977 - -4.0
1,284,238 - MMP_RS06685 0.21 -5.0
1,284,559 - MMP_RS06685 0.36 -3.0
1,284,638 + MMP_RS06685 0.40 -3.5
1,284,686 - MMP_RS06685 0.43 -3.5
1,284,762 - MMP_RS06685 0.46 -4.4
1,284,763 + MMP_RS06685 0.47 -4.3

Or see this region's nucleotide sequence