Experiment: formate McAA riboflavin dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02925 and MMP_RS02930 are separated by 123 nucleotides MMP_RS02930 and MMP_RS02935 are separated by 43 nucleotides MMP_RS02935 and MMP_RS02940 overlap by 4 nucleotides
MMP_RS02925: MMP_RS02925 - ornithine carbamoyltransferase, at 556,641 to 557,555
_RS02925
MMP_RS02930: MMP_RS02930 - class I SAM-dependent methyltransferase, at 557,679 to 558,281
_RS02930
MMP_RS02935: MMP_RS02935 - A24 family peptidase, at 558,325 to 559,017
_RS02935
MMP_RS02940: MMP_RS02940 - TatD family hydrolase, at 559,014 to 559,856
_RS02940
Position (kb) 557
558
559 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 557.086 kb on + strand at 557.086 kb on + strand at 557.383 kb on + strand at 557.547 kb on - strand at 557.593 kb on + strand at 557.617 kb on - strand at 557.618 kb on + strand at 557.624 kb on - strand at 557.631 kb on + strand at 557.636 kb on + strand at 557.658 kb on + strand at 557.658 kb on + strand at 557.762 kb on - strand, within MMP_RS02930 at 557.996 kb on - strand, within MMP_RS02930 at 558.073 kb on - strand, within MMP_RS02930 at 558.192 kb on - strand, within MMP_RS02930 at 558.227 kb on - strand at 558.290 kb on - strand at 558.301 kb on - strand at 558.302 kb on + strand at 558.334 kb on - strand at 558.334 kb on - strand at 558.460 kb on + strand, within MMP_RS02935 at 558.616 kb on - strand, within MMP_RS02935 at 558.649 kb on - strand, within MMP_RS02935 at 558.962 kb on + strand at 558.962 kb on + strand at 558.965 kb on - strand at 558.966 kb on + strand at 558.966 kb on + strand at 558.969 kb on + strand at 558.992 kb on - strand at 559.221 kb on - strand, within MMP_RS02940 at 559.272 kb on - strand, within MMP_RS02940
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA riboflavin dropout remove 557,086 + -3.8 557,086 + -2.6 557,383 + -2.6 557,547 - -2.4 557,593 + -1.6 557,617 - -2.4 557,618 + -4.7 557,624 - -2.4 557,631 + -0.1 557,636 + -0.4 557,658 + +0.4 557,658 + +0.1 557,762 - MMP_RS02930 0.14 +0.3 557,996 - MMP_RS02930 0.53 -0.3 558,073 - MMP_RS02930 0.65 -1.9 558,192 - MMP_RS02930 0.85 -1.2 558,227 - -0.1 558,290 - +0.3 558,301 - -0.1 558,302 + +0.3 558,334 - -0.7 558,334 - +0.1 558,460 + MMP_RS02935 0.19 -0.2 558,616 - MMP_RS02935 0.42 -0.6 558,649 - MMP_RS02935 0.47 +0.4 558,962 + -0.0 558,962 + -0.3 558,965 - +0.0 558,966 + -0.2 558,966 + -0.7 558,969 + +0.2 558,992 - +0.1 559,221 - MMP_RS02940 0.25 +0.1 559,272 - MMP_RS02940 0.31 +0.3
Or see this region's nucleotide sequence