Experiment: formate McAA riboflavin dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00045 and MMP_RS00050 are separated by 38 nucleotides MMP_RS00050 and MMP_RS00055 are separated by 81 nucleotides
MMP_RS00045: MMP_RS00045 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 11,517 to 12,608
_RS00045
MMP_RS00050: MMP_RS00050 - AarF/UbiB family protein, at 12,647 to 13,543
_RS00050
MMP_RS00055: MMP_RS00055 - DUF2254 domain-containing protein, at 13,625 to 15,208
_RS00055
Position (kb) 12
13
14 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 11.671 kb on + strand at 11.714 kb on + strand at 11.825 kb on + strand at 12.653 kb on + strand at 12.665 kb on - strand at 12.668 kb on + strand at 12.681 kb on - strand at 12.682 kb on + strand at 12.685 kb on - strand at 12.686 kb on + strand at 12.689 kb on - strand at 12.689 kb on - strand at 12.690 kb on + strand at 12.690 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.699 kb on + strand at 12.729 kb on - strand at 12.758 kb on - strand, within MMP_RS00050 at 12.777 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.882 kb on + strand, within MMP_RS00050 at 12.924 kb on - strand, within MMP_RS00050 at 13.004 kb on - strand, within MMP_RS00050 at 13.073 kb on - strand, within MMP_RS00050 at 13.145 kb on + strand, within MMP_RS00050 at 13.168 kb on + strand, within MMP_RS00050 at 13.247 kb on + strand, within MMP_RS00050 at 13.324 kb on - strand, within MMP_RS00050 at 13.431 kb on + strand, within MMP_RS00050 at 13.595 kb on + strand at 13.598 kb on + strand at 13.598 kb on + strand at 13.608 kb on - strand at 13.608 kb on - strand at 13.630 kb on - strand at 13.631 kb on + strand at 13.703 kb on + strand at 13.787 kb on - strand, within MMP_RS00055 at 13.835 kb on - strand, within MMP_RS00055 at 13.849 kb on + strand, within MMP_RS00055 at 13.991 kb on - strand, within MMP_RS00055 at 13.994 kb on + strand, within MMP_RS00055 at 14.033 kb on - strand, within MMP_RS00055 at 14.264 kb on - strand, within MMP_RS00055 at 14.272 kb on + strand, within MMP_RS00055 at 14.283 kb on - strand, within MMP_RS00055 at 14.327 kb on - strand, within MMP_RS00055 at 14.328 kb on + strand, within MMP_RS00055 at 14.328 kb on + strand, within MMP_RS00055 at 14.334 kb on - strand, within MMP_RS00055 at 14.345 kb on - strand, within MMP_RS00055 at 14.420 kb on - strand, within MMP_RS00055 at 14.444 kb on - strand, within MMP_RS00055 at 14.448 kb on - strand, within MMP_RS00055
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA riboflavin dropout remove 11,671 + -1.5 11,714 + -0.1 11,825 + -1.1 12,653 + -1.0 12,665 - -2.7 12,668 + -2.3 12,681 - -0.4 12,682 + -2.6 12,685 - -5.3 12,686 + -2.8 12,689 - -1.9 12,689 - -1.1 12,690 + -0.8 12,690 + -3.0 12,695 + -1.4 12,695 + -1.5 12,695 + -1.9 12,695 + -1.1 12,695 + -0.8 12,695 + -1.0 12,699 + -0.5 12,729 - +1.4 12,758 - MMP_RS00050 0.12 -1.1 12,777 - MMP_RS00050 0.14 -0.8 12,782 - MMP_RS00050 0.15 -0.3 12,782 - MMP_RS00050 0.15 -0.7 12,882 + MMP_RS00050 0.26 -1.1 12,924 - MMP_RS00050 0.31 -1.0 13,004 - MMP_RS00050 0.40 -0.6 13,073 - MMP_RS00050 0.47 -1.2 13,145 + MMP_RS00050 0.56 -1.8 13,168 + MMP_RS00050 0.58 -1.1 13,247 + MMP_RS00050 0.67 -0.8 13,324 - MMP_RS00050 0.75 -1.1 13,431 + MMP_RS00050 0.87 -1.1 13,595 + -1.6 13,598 + -1.8 13,598 + -1.2 13,608 - -0.1 13,608 - -0.3 13,630 - +0.7 13,631 + -0.2 13,703 + +0.5 13,787 - MMP_RS00055 0.10 +0.1 13,835 - MMP_RS00055 0.13 -0.0 13,849 + MMP_RS00055 0.14 +1.2 13,991 - MMP_RS00055 0.23 -0.1 13,994 + MMP_RS00055 0.23 +0.2 14,033 - MMP_RS00055 0.26 -0.1 14,264 - MMP_RS00055 0.40 -0.1 14,272 + MMP_RS00055 0.41 +0.6 14,283 - MMP_RS00055 0.42 -0.5 14,327 - MMP_RS00055 0.44 -0.4 14,328 + MMP_RS00055 0.44 +0.3 14,328 + MMP_RS00055 0.44 +0.2 14,334 - MMP_RS00055 0.45 -0.5 14,345 - MMP_RS00055 0.45 +0.0 14,420 - MMP_RS00055 0.50 -0.5 14,444 - MMP_RS00055 0.52 +0.2 14,448 - MMP_RS00055 0.52 +0.8
Or see this region's nucleotide sequence