Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06220

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06218 and H281DRAFT_06219 are separated by 21 nucleotidesH281DRAFT_06219 and H281DRAFT_06220 are separated by 16 nucleotidesH281DRAFT_06220 and H281DRAFT_06221 are separated by 123 nucleotides H281DRAFT_06218: H281DRAFT_06218 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 114,447 to 115,313 _06218 H281DRAFT_06219: H281DRAFT_06219 - hypothetical protein, at 115,335 to 116,063 _06219 H281DRAFT_06220: H281DRAFT_06220 - hypothetical protein, at 116,080 to 116,385 _06220 H281DRAFT_06221: H281DRAFT_06221 - NIPSNAP protein, at 116,509 to 117,030 _06221 Position (kb) 116 117Strain fitness (log2 ratio) -1 0 1 2at 115.346 kb on + strandat 115.575 kb on - strand, within H281DRAFT_06219at 115.606 kb on + strand, within H281DRAFT_06219at 115.606 kb on + strand, within H281DRAFT_06219at 115.606 kb on + strand, within H281DRAFT_06219at 115.666 kb on - strand, within H281DRAFT_06219at 115.666 kb on - strand, within H281DRAFT_06219at 115.677 kb on + strand, within H281DRAFT_06219at 115.678 kb on - strand, within H281DRAFT_06219at 115.678 kb on - strand, within H281DRAFT_06219at 115.682 kb on + strand, within H281DRAFT_06219at 115.682 kb on + strand, within H281DRAFT_06219at 115.682 kb on + strand, within H281DRAFT_06219at 115.682 kb on + strand, within H281DRAFT_06219at 115.683 kb on - strand, within H281DRAFT_06219at 115.693 kb on - strand, within H281DRAFT_06219at 115.806 kb on + strand, within H281DRAFT_06219at 115.806 kb on + strand, within H281DRAFT_06219at 115.807 kb on - strandat 115.807 kb on - strand, within H281DRAFT_06219at 115.835 kb on - strand, within H281DRAFT_06219at 115.836 kb on + strand, within H281DRAFT_06219at 115.872 kb on + strand, within H281DRAFT_06219at 115.873 kb on - strand, within H281DRAFT_06219at 115.883 kb on + strand, within H281DRAFT_06219at 115.885 kb on + strand, within H281DRAFT_06219at 115.886 kb on - strand, within H281DRAFT_06219at 115.886 kb on - strand, within H281DRAFT_06219at 115.886 kb on - strand, within H281DRAFT_06219at 115.997 kb on + strandat 115.997 kb on + strandat 116.027 kb on + strandat 116.157 kb on + strand, within H281DRAFT_06220at 116.187 kb on + strand, within H281DRAFT_06220at 116.259 kb on + strand, within H281DRAFT_06220at 116.388 kb on - strandat 116.388 kb on - strandat 116.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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115,346 + +0.2
115,575 - H281DRAFT_06219 0.33 -1.0
115,606 + H281DRAFT_06219 0.37 +0.4
115,606 + H281DRAFT_06219 0.37 -1.0
115,606 + H281DRAFT_06219 0.37 +0.5
115,666 - H281DRAFT_06219 0.45 -0.7
115,666 - H281DRAFT_06219 0.45 +0.2
115,677 + H281DRAFT_06219 0.47 -0.3
115,678 - H281DRAFT_06219 0.47 +0.4
115,678 - H281DRAFT_06219 0.47 -0.6
115,682 + H281DRAFT_06219 0.48 -0.1
115,682 + H281DRAFT_06219 0.48 +0.3
115,682 + H281DRAFT_06219 0.48 -0.3
115,682 + H281DRAFT_06219 0.48 +0.3
115,683 - H281DRAFT_06219 0.48 +0.2
115,693 - H281DRAFT_06219 0.49 +0.4
115,806 + H281DRAFT_06219 0.65 -0.1
115,806 + H281DRAFT_06219 0.65 +1.0
115,807 - +1.8
115,807 - H281DRAFT_06219 0.65 +0.2
115,835 - H281DRAFT_06219 0.69 -0.4
115,836 + H281DRAFT_06219 0.69 +0.2
115,872 + H281DRAFT_06219 0.74 -1.0
115,873 - H281DRAFT_06219 0.74 +0.2
115,883 + H281DRAFT_06219 0.75 -0.8
115,885 + H281DRAFT_06219 0.75 +0.2
115,886 - H281DRAFT_06219 0.76 -0.0
115,886 - H281DRAFT_06219 0.76 +0.6
115,886 - H281DRAFT_06219 0.76 +0.0
115,997 + +0.7
115,997 + -0.5
116,027 + +0.7
116,157 + H281DRAFT_06220 0.25 +0.5
116,187 + H281DRAFT_06220 0.35 +0.5
116,259 + H281DRAFT_06220 0.58 +2.4
116,388 - +0.4
116,388 - +0.8
116,388 - +0.8

Or see this region's nucleotide sequence