Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06056

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06055 and H281DRAFT_06056 are separated by 93 nucleotidesH281DRAFT_06056 and H281DRAFT_06057 are separated by 51 nucleotidesH281DRAFT_06057 and H281DRAFT_06058 are separated by 33 nucleotides H281DRAFT_06055: H281DRAFT_06055 - Hemolysin, contains CBS domains, at 69,093 to 70,436 _06055 H281DRAFT_06056: H281DRAFT_06056 - histidine kinase (EC 2.7.13.3), at 70,530 to 71,465 _06056 H281DRAFT_06057: H281DRAFT_06057 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 71,517 to 71,858 _06057 H281DRAFT_06058: H281DRAFT_06058 - transcriptional regulator, AraC family, at 71,892 to 72,674 _06058 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 69.530 kb on - strand, within H281DRAFT_06055at 69.569 kb on + strand, within H281DRAFT_06055at 69.814 kb on + strand, within H281DRAFT_06055at 69.896 kb on - strand, within H281DRAFT_06055at 69.983 kb on - strand, within H281DRAFT_06055at 69.994 kb on + strand, within H281DRAFT_06055at 70.235 kb on + strand, within H281DRAFT_06055at 70.262 kb on - strand, within H281DRAFT_06055at 70.262 kb on - strand, within H281DRAFT_06055at 70.262 kb on - strand, within H281DRAFT_06055at 70.470 kb on + strandat 70.471 kb on - strandat 70.471 kb on - strandat 70.471 kb on - strandat 70.653 kb on + strand, within H281DRAFT_06056at 70.654 kb on - strand, within H281DRAFT_06056at 70.671 kb on - strandat 70.671 kb on - strand, within H281DRAFT_06056at 70.811 kb on + strand, within H281DRAFT_06056at 70.811 kb on + strand, within H281DRAFT_06056at 70.963 kb on - strand, within H281DRAFT_06056at 70.963 kb on - strand, within H281DRAFT_06056at 71.158 kb on + strand, within H281DRAFT_06056at 71.159 kb on - strand, within H281DRAFT_06056at 71.168 kb on + strand, within H281DRAFT_06056at 71.168 kb on + strand, within H281DRAFT_06056at 71.168 kb on + strand, within H281DRAFT_06056at 71.168 kb on + strand, within H281DRAFT_06056at 71.168 kb on + strand, within H281DRAFT_06056at 71.168 kb on + strand, within H281DRAFT_06056at 71.169 kb on - strand, within H281DRAFT_06056at 71.169 kb on - strand, within H281DRAFT_06056at 71.206 kb on - strand, within H281DRAFT_06056at 71.377 kb on - strandat 71.378 kb on + strandat 71.378 kb on + strandat 71.378 kb on + strandat 71.379 kb on - strandat 71.477 kb on + strandat 71.478 kb on - strandat 71.516 kb on + strandat 71.516 kb on + strandat 71.516 kb on + strandat 71.517 kb on - strandat 71.517 kb on - strandat 71.614 kb on - strand, within H281DRAFT_06057at 71.857 kb on - strandat 71.857 kb on - strandat 72.084 kb on + strand, within H281DRAFT_06058at 72.085 kb on - strand, within H281DRAFT_06058at 72.198 kb on - strand, within H281DRAFT_06058

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
69,530 - H281DRAFT_06055 0.33 -1.4
69,569 + H281DRAFT_06055 0.35 -0.4
69,814 + H281DRAFT_06055 0.54 +0.3
69,896 - H281DRAFT_06055 0.60 +2.0
69,983 - H281DRAFT_06055 0.66 -0.0
69,994 + H281DRAFT_06055 0.67 -0.1
70,235 + H281DRAFT_06055 0.85 +1.1
70,262 - H281DRAFT_06055 0.87 -0.1
70,262 - H281DRAFT_06055 0.87 +0.2
70,262 - H281DRAFT_06055 0.87 -0.8
70,470 + -0.2
70,471 - +0.0
70,471 - -0.3
70,471 - +0.7
70,653 + H281DRAFT_06056 0.13 +0.8
70,654 - H281DRAFT_06056 0.13 +0.4
70,671 - +0.4
70,671 - H281DRAFT_06056 0.15 +0.1
70,811 + H281DRAFT_06056 0.30 +0.7
70,811 + H281DRAFT_06056 0.30 +0.5
70,963 - H281DRAFT_06056 0.46 +0.5
70,963 - H281DRAFT_06056 0.46 +0.7
71,158 + H281DRAFT_06056 0.67 +0.6
71,159 - H281DRAFT_06056 0.67 +0.8
71,168 + H281DRAFT_06056 0.68 +1.0
71,168 + H281DRAFT_06056 0.68 +0.4
71,168 + H281DRAFT_06056 0.68 +0.7
71,168 + H281DRAFT_06056 0.68 +0.6
71,168 + H281DRAFT_06056 0.68 +0.7
71,168 + H281DRAFT_06056 0.68 +0.5
71,169 - H281DRAFT_06056 0.68 +0.7
71,169 - H281DRAFT_06056 0.68 +0.6
71,206 - H281DRAFT_06056 0.72 +0.5
71,377 - -0.4
71,378 + -0.2
71,378 + -2.0
71,378 + -0.1
71,379 - -0.7
71,477 + +0.1
71,478 - +0.4
71,516 + +1.1
71,516 + -0.1
71,516 + -0.7
71,517 - -0.6
71,517 - +0.1
71,614 - H281DRAFT_06057 0.28 +0.5
71,857 - +0.4
71,857 - +0.7
72,084 + H281DRAFT_06058 0.25 +1.0
72,085 - H281DRAFT_06058 0.25 -0.8
72,198 - H281DRAFT_06058 0.39 +0.3

Or see this region's nucleotide sequence