Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05555

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05554 and H281DRAFT_05555 are separated by 330 nucleotidesH281DRAFT_05555 and H281DRAFT_05556 are separated by 250 nucleotides H281DRAFT_05554: H281DRAFT_05554 - hypothetical protein, at 143,280 to 143,915 _05554 H281DRAFT_05555: H281DRAFT_05555 - transcriptional regulator, MarR family with acetyltransferase activity, at 144,246 to 145,247 _05555 H281DRAFT_05556: H281DRAFT_05556 - 3-oxoacyl-[acyl-carrier protein] reductase, at 145,498 to 146,241 _05556 Position (kb) 144 145 146Strain fitness (log2 ratio) -1 0 1 2at 143.256 kb on + strandat 143.310 kb on + strandat 143.310 kb on + strandat 143.316 kb on - strandat 143.379 kb on + strand, within H281DRAFT_05554at 143.380 kb on - strand, within H281DRAFT_05554at 143.448 kb on + strand, within H281DRAFT_05554at 143.449 kb on - strand, within H281DRAFT_05554at 143.492 kb on + strand, within H281DRAFT_05554at 143.493 kb on - strand, within H281DRAFT_05554at 143.515 kb on + strand, within H281DRAFT_05554at 143.515 kb on + strand, within H281DRAFT_05554at 143.659 kb on + strand, within H281DRAFT_05554at 143.660 kb on - strand, within H281DRAFT_05554at 143.660 kb on - strand, within H281DRAFT_05554at 143.695 kb on + strand, within H281DRAFT_05554at 143.696 kb on - strand, within H281DRAFT_05554at 143.916 kb on - strandat 143.934 kb on - strandat 144.177 kb on + strandat 144.215 kb on + strandat 144.258 kb on - strandat 144.371 kb on - strand, within H281DRAFT_05555at 144.373 kb on - strand, within H281DRAFT_05555at 144.373 kb on - strand, within H281DRAFT_05555at 144.413 kb on - strand, within H281DRAFT_05555at 144.478 kb on - strand, within H281DRAFT_05555at 144.689 kb on - strand, within H281DRAFT_05555at 144.760 kb on + strand, within H281DRAFT_05555at 144.763 kb on - strand, within H281DRAFT_05555at 144.784 kb on - strandat 144.818 kb on - strand, within H281DRAFT_05555at 145.059 kb on + strand, within H281DRAFT_05555at 145.060 kb on - strand, within H281DRAFT_05555at 145.371 kb on - strandat 145.425 kb on + strandat 145.425 kb on + strandat 145.426 kb on - strandat 145.440 kb on - strandat 145.440 kb on - strandat 145.440 kb on - strandat 145.440 kb on - strandat 145.477 kb on - strandat 145.517 kb on - strandat 145.517 kb on - strandat 145.550 kb on - strandat 145.551 kb on + strandat 145.551 kb on + strandat 145.750 kb on + strandat 145.751 kb on - strand, within H281DRAFT_05556at 145.751 kb on - strand, within H281DRAFT_05556at 145.827 kb on + strand, within H281DRAFT_05556at 145.828 kb on - strand, within H281DRAFT_05556at 146.119 kb on - strand, within H281DRAFT_05556

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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143,256 + +0.3
143,310 + -0.4
143,310 + -0.2
143,316 - -0.5
143,379 + H281DRAFT_05554 0.16 -0.6
143,380 - H281DRAFT_05554 0.16 +0.2
143,448 + H281DRAFT_05554 0.26 +0.6
143,449 - H281DRAFT_05554 0.27 +0.1
143,492 + H281DRAFT_05554 0.33 -0.1
143,493 - H281DRAFT_05554 0.33 -0.3
143,515 + H281DRAFT_05554 0.37 -0.2
143,515 + H281DRAFT_05554 0.37 +0.4
143,659 + H281DRAFT_05554 0.60 +0.2
143,660 - H281DRAFT_05554 0.60 -0.4
143,660 - H281DRAFT_05554 0.60 +0.3
143,695 + H281DRAFT_05554 0.65 -0.1
143,696 - H281DRAFT_05554 0.65 +0.8
143,916 - +1.0
143,934 - -0.1
144,177 + +0.0
144,215 + -0.5
144,258 - +0.5
144,371 - H281DRAFT_05555 0.12 +0.2
144,373 - H281DRAFT_05555 0.13 -0.1
144,373 - H281DRAFT_05555 0.13 -0.2
144,413 - H281DRAFT_05555 0.17 +0.3
144,478 - H281DRAFT_05555 0.23 +0.4
144,689 - H281DRAFT_05555 0.44 -0.6
144,760 + H281DRAFT_05555 0.51 +0.1
144,763 - H281DRAFT_05555 0.52 +0.7
144,784 - -1.1
144,818 - H281DRAFT_05555 0.57 -0.8
145,059 + H281DRAFT_05555 0.81 -0.2
145,060 - H281DRAFT_05555 0.81 +0.2
145,371 - -0.4
145,425 + +1.9
145,425 + +0.3
145,426 - +0.1
145,440 - +0.3
145,440 - +0.2
145,440 - +0.3
145,440 - +0.6
145,477 - -0.4
145,517 - -0.5
145,517 - +0.2
145,550 - -0.1
145,551 + -0.3
145,551 + -0.3
145,750 + -0.7
145,751 - H281DRAFT_05556 0.34 -0.2
145,751 - H281DRAFT_05556 0.34 -0.7
145,827 + H281DRAFT_05556 0.44 +0.1
145,828 - H281DRAFT_05556 0.44 -0.3
146,119 - H281DRAFT_05556 0.83 +0.1

Or see this region's nucleotide sequence