Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05389

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05388 and H281DRAFT_05389 are separated by 214 nucleotidesH281DRAFT_05389 and H281DRAFT_05390 are separated by 357 nucleotides H281DRAFT_05388: H281DRAFT_05388 - ribonucleoside-diphosphate reductase class II, at 148,923 to 151,508 _05388 H281DRAFT_05389: H281DRAFT_05389 - protein of unknown function (DUF3331), at 151,723 to 152,013 _05389 H281DRAFT_05390: H281DRAFT_05390 - Predicted PurR-regulated permease PerM, at 152,371 to 153,471 _05390 Position (kb) 151 152 153Strain fitness (log2 ratio) -1 0 1at 150.731 kb on + strand, within H281DRAFT_05388at 150.732 kb on - strand, within H281DRAFT_05388at 150.732 kb on - strand, within H281DRAFT_05388at 150.732 kb on - strand, within H281DRAFT_05388at 151.007 kb on + strand, within H281DRAFT_05388at 151.007 kb on + strand, within H281DRAFT_05388at 151.008 kb on - strand, within H281DRAFT_05388at 151.008 kb on - strand, within H281DRAFT_05388at 151.008 kb on - strand, within H281DRAFT_05388at 151.009 kb on + strand, within H281DRAFT_05388at 151.009 kb on + strand, within H281DRAFT_05388at 151.010 kb on - strand, within H281DRAFT_05388at 151.010 kb on - strand, within H281DRAFT_05388at 151.010 kb on - strand, within H281DRAFT_05388at 151.138 kb on + strand, within H281DRAFT_05388at 151.138 kb on + strand, within H281DRAFT_05388at 151.139 kb on - strand, within H281DRAFT_05388at 151.437 kb on + strandat 151.556 kb on + strandat 151.556 kb on + strandat 151.556 kb on + strandat 151.557 kb on - strandat 151.557 kb on - strandat 151.557 kb on - strandat 151.710 kb on + strandat 151.711 kb on - strandat 151.898 kb on + strand, within H281DRAFT_05389at 152.025 kb on + strandat 152.046 kb on + strandat 152.046 kb on + strandat 152.046 kb on + strandat 152.103 kb on - strandat 152.176 kb on - strandat 152.176 kb on - strandat 152.176 kb on - strandat 152.180 kb on + strandat 152.181 kb on - strandat 152.181 kb on - strandat 152.181 kb on - strandat 152.181 kb on - strandat 152.259 kb on - strandat 152.298 kb on + strandat 152.298 kb on + strandat 152.298 kb on + strandat 152.299 kb on - strandat 152.358 kb on + strandat 152.359 kb on - strandat 152.476 kb on + strandat 152.477 kb on - strandat 152.477 kb on - strandat 152.815 kb on + strand, within H281DRAFT_05390at 152.815 kb on + strand, within H281DRAFT_05390at 152.816 kb on - strand, within H281DRAFT_05390at 152.816 kb on - strand, within H281DRAFT_05390at 152.816 kb on - strand, within H281DRAFT_05390

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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150,731 + H281DRAFT_05388 0.70 +0.4
150,732 - H281DRAFT_05388 0.70 +0.2
150,732 - H281DRAFT_05388 0.70 +0.1
150,732 - H281DRAFT_05388 0.70 -0.1
151,007 + H281DRAFT_05388 0.81 +0.8
151,007 + H281DRAFT_05388 0.81 -0.4
151,008 - H281DRAFT_05388 0.81 -0.8
151,008 - H281DRAFT_05388 0.81 +0.3
151,008 - H281DRAFT_05388 0.81 +0.3
151,009 + H281DRAFT_05388 0.81 +0.3
151,009 + H281DRAFT_05388 0.81 -0.3
151,010 - H281DRAFT_05388 0.81 +0.6
151,010 - H281DRAFT_05388 0.81 +0.1
151,010 - H281DRAFT_05388 0.81 -0.0
151,138 + H281DRAFT_05388 0.86 -0.0
151,138 + H281DRAFT_05388 0.86 +0.0
151,139 - H281DRAFT_05388 0.86 +0.2
151,437 + +0.6
151,556 + +0.1
151,556 + -0.1
151,556 + +0.7
151,557 - +0.5
151,557 - +0.1
151,557 - +0.4
151,710 + -0.1
151,711 - +0.6
151,898 + H281DRAFT_05389 0.60 +0.5
152,025 + +0.2
152,046 + -0.1
152,046 + +0.2
152,046 + +0.3
152,103 - +0.2
152,176 - -0.1
152,176 - +0.7
152,176 - -0.1
152,180 + -0.7
152,181 - -0.0
152,181 - +0.1
152,181 - +0.3
152,181 - -0.3
152,259 - -0.1
152,298 + +0.1
152,298 + -0.5
152,298 + +0.5
152,299 - +0.8
152,358 + +0.5
152,359 - +0.1
152,476 + -0.2
152,477 - +0.3
152,477 - -0.1
152,815 + H281DRAFT_05390 0.40 -0.7
152,815 + H281DRAFT_05390 0.40 -0.3
152,816 - H281DRAFT_05390 0.40 -0.2
152,816 - H281DRAFT_05390 0.40 +0.5
152,816 - H281DRAFT_05390 0.40 +0.8

Or see this region's nucleotide sequence