Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04824 and H281DRAFT_04825 are separated by 7 nucleotides H281DRAFT_04825 and H281DRAFT_04826 overlap by 19 nucleotides H281DRAFT_04826 and H281DRAFT_04827 are separated by 156 nucleotides
H281DRAFT_04824: H281DRAFT_04824 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 259,165 to 259,716
_04824
H281DRAFT_04825: H281DRAFT_04825 - dTDP-4-dehydrorhamnose reductase, at 259,724 to 260,617
_04825
H281DRAFT_04826: H281DRAFT_04826 - rhamnosyltransferase, at 260,599 to 261,510
_04826
H281DRAFT_04827: H281DRAFT_04827 - lipopolysaccharide transport system permease protein, at 261,667 to 262,524
_04827
Position (kb) 260
261
262 Strain fitness (log2 ratio) -1
0
1 at 259.723 kb on + strand at 259.723 kb on + strand at 259.723 kb on + strand at 260.627 kb on + strand at 261.227 kb on + strand, within H281DRAFT_04826 at 261.316 kb on + strand, within H281DRAFT_04826 at 261.316 kb on + strand, within H281DRAFT_04826 at 261.317 kb on - strand, within H281DRAFT_04826 at 261.358 kb on + strand, within H281DRAFT_04826 at 261.359 kb on - strand, within H281DRAFT_04826 at 261.531 kb on + strand at 261.570 kb on + strand at 261.592 kb on + strand at 261.592 kb on + strand at 261.592 kb on + strand at 261.662 kb on + strand at 261.662 kb on + strand at 261.663 kb on - strand at 261.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 259,723 + +0.1 259,723 + +0.4 259,723 + -0.9 260,627 + +0.6 261,227 + H281DRAFT_04826 0.69 +1.0 261,316 + H281DRAFT_04826 0.79 +1.3 261,316 + H281DRAFT_04826 0.79 +0.6 261,317 - H281DRAFT_04826 0.79 +0.4 261,358 + H281DRAFT_04826 0.83 -0.2 261,359 - H281DRAFT_04826 0.83 +0.1 261,531 + -0.4 261,570 + +0.4 261,592 + +0.2 261,592 + +1.1 261,592 + -0.5 261,662 + +0.7 261,662 + +1.2 261,663 - +0.3 261,666 + +1.1
Or see this region's nucleotide sequence