Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04069

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04066 and H281DRAFT_04067 are separated by 278 nucleotidesH281DRAFT_04067 and H281DRAFT_04068 are separated by 10 nucleotidesH281DRAFT_04068 and H281DRAFT_04069 are separated by 241 nucleotidesH281DRAFT_04069 and H281DRAFT_04070 are separated by 64 nucleotidesH281DRAFT_04070 and H281DRAFT_04071 overlap by 1 nucleotides H281DRAFT_04066: H281DRAFT_04066 - DNA replication and repair protein RadC, at 167,694 to 168,458 _04066 H281DRAFT_04067: H281DRAFT_04067 - LSU ribosomal protein L28P, at 168,737 to 168,970 _04067 H281DRAFT_04068: H281DRAFT_04068 - LSU ribosomal protein L33P, at 168,981 to 169,148 _04068 H281DRAFT_04069: H281DRAFT_04069 - L-aspartate oxidase, at 169,390 to 170,988 _04069 H281DRAFT_04070: H281DRAFT_04070 - nicotinate-nucleotide pyrophosphorylase [carboxylating], at 171,053 to 171,982 _04070 H281DRAFT_04071: H281DRAFT_04071 - quinolinate synthetase, at 171,982 to 173,169 _04071 Position (kb) 169 170 171Strain fitness (log2 ratio) -1 0 1at 168.410 kb on - strandat 168.428 kb on - strandat 168.428 kb on - strandat 168.428 kb on - strandat 168.429 kb on + strandat 168.429 kb on + strandat 168.429 kb on + strandat 168.483 kb on + strandat 168.483 kb on + strandat 168.483 kb on + strandat 169.142 kb on + strandat 169.269 kb on + strandat 169.269 kb on + strandat 169.269 kb on + strandat 169.270 kb on - strandat 169.273 kb on + strandat 169.273 kb on + strandat 169.273 kb on + strandat 169.273 kb on + strandat 169.274 kb on - strandat 169.274 kb on - strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.282 kb on - strandat 169.282 kb on - strandat 169.282 kb on - strandat 169.334 kb on + strandat 169.335 kb on - strandat 169.359 kb on + strandat 169.359 kb on + strandat 169.359 kb on + strandat 169.737 kb on + strand, within H281DRAFT_04069at 169.785 kb on - strand, within H281DRAFT_04069at 169.847 kb on - strand, within H281DRAFT_04069at 169.910 kb on - strand, within H281DRAFT_04069at 169.959 kb on + strand, within H281DRAFT_04069at 169.993 kb on + strand, within H281DRAFT_04069at 169.993 kb on + strand, within H281DRAFT_04069at 169.993 kb on + strand, within H281DRAFT_04069at 169.994 kb on - strand, within H281DRAFT_04069at 169.994 kb on - strand, within H281DRAFT_04069at 169.999 kb on + strand, within H281DRAFT_04069at 170.000 kb on - strand, within H281DRAFT_04069at 170.073 kb on + strand, within H281DRAFT_04069at 170.074 kb on - strand, within H281DRAFT_04069at 170.279 kb on + strand, within H281DRAFT_04069at 170.279 kb on + strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.290 kb on + strand, within H281DRAFT_04069at 170.291 kb on - strand, within H281DRAFT_04069at 170.291 kb on - strand, within H281DRAFT_04069at 170.291 kb on - strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.295 kb on - strand, within H281DRAFT_04069at 170.295 kb on - strand, within H281DRAFT_04069at 170.295 kb on - strand, within H281DRAFT_04069at 170.299 kb on - strand, within H281DRAFT_04069at 170.379 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.417 kb on - strand, within H281DRAFT_04069at 170.436 kb on + strand, within H281DRAFT_04069at 170.473 kb on + strand, within H281DRAFT_04069at 170.473 kb on + strand, within H281DRAFT_04069at 170.474 kb on - strand, within H281DRAFT_04069at 170.474 kb on - strand, within H281DRAFT_04069at 170.710 kb on + strand, within H281DRAFT_04069at 170.710 kb on + strand, within H281DRAFT_04069at 170.710 kb on + strand, within H281DRAFT_04069at 170.711 kb on - strand, within H281DRAFT_04069at 170.711 kb on - strand, within H281DRAFT_04069at 170.768 kb on + strand, within H281DRAFT_04069at 170.791 kb on + strand, within H281DRAFT_04069at 170.791 kb on + strand, within H281DRAFT_04069at 170.791 kb on + strand, within H281DRAFT_04069at 170.792 kb on - strand, within H281DRAFT_04069at 170.794 kb on + strand, within H281DRAFT_04069at 170.849 kb on + strandat 170.849 kb on + strandat 170.849 kb on + strandat 170.850 kb on - strandat 170.850 kb on - strandat 170.850 kb on - strandat 170.850 kb on - strandat 171.035 kb on + strandat 171.036 kb on - strandat 171.072 kb on + strandat 171.408 kb on + strand, within H281DRAFT_04070at 171.409 kb on - strand, within H281DRAFT_04070at 171.454 kb on - strand, within H281DRAFT_04070at 171.514 kb on + strand, within H281DRAFT_04070at 171.534 kb on + strand, within H281DRAFT_04070at 171.564 kb on - strand, within H281DRAFT_04070at 171.602 kb on - strand, within H281DRAFT_04070at 171.886 kb on - strand, within H281DRAFT_04070at 171.936 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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168,410 - +0.5
168,428 - +0.5
168,428 - -1.1
168,428 - -1.2
168,429 + -0.6
168,429 + +0.8
168,429 + +0.6
168,483 + -0.0
168,483 + +0.0
168,483 + -0.0
169,142 + +0.5
169,269 + +0.3
169,269 + +0.0
169,269 + +1.1
169,270 - +0.3
169,273 + -0.2
169,273 + +0.5
169,273 + -0.4
169,273 + +0.2
169,274 - -0.2
169,274 - -0.5
169,279 + +0.2
169,279 + +0.3
169,279 + -1.2
169,279 + +0.1
169,279 + -0.8
169,279 + +0.6
169,279 + -0.0
169,279 + +0.5
169,279 + +0.6
169,279 + +0.9
169,280 - +0.3
169,280 - +0.6
169,280 - +0.1
169,280 - +1.3
169,280 - +0.2
169,280 - -1.4
169,282 - +0.4
169,282 - -0.3
169,282 - -0.4
169,334 + +0.3
169,335 - +0.8
169,359 + +0.6
169,359 + +0.1
169,359 + -0.8
169,737 + H281DRAFT_04069 0.22 -1.0
169,785 - H281DRAFT_04069 0.25 -0.8
169,847 - H281DRAFT_04069 0.29 -0.1
169,910 - H281DRAFT_04069 0.33 -0.2
169,959 + H281DRAFT_04069 0.36 -0.4
169,993 + H281DRAFT_04069 0.38 -0.5
169,993 + H281DRAFT_04069 0.38 -0.8
169,993 + H281DRAFT_04069 0.38 -0.5
169,994 - H281DRAFT_04069 0.38 -1.3
169,994 - H281DRAFT_04069 0.38 -0.5
169,999 + H281DRAFT_04069 0.38 -0.3
170,000 - H281DRAFT_04069 0.38 -1.7
170,073 + H281DRAFT_04069 0.43 -1.5
170,074 - H281DRAFT_04069 0.43 -0.8
170,279 + H281DRAFT_04069 0.56 -1.2
170,279 + H281DRAFT_04069 0.56 -1.1
170,280 - H281DRAFT_04069 0.56 -1.4
170,280 - H281DRAFT_04069 0.56 -0.3
170,280 - H281DRAFT_04069 0.56 -0.4
170,280 - H281DRAFT_04069 0.56 -1.0
170,290 + H281DRAFT_04069 0.56 -0.8
170,291 - H281DRAFT_04069 0.56 -0.9
170,291 - H281DRAFT_04069 0.56 +1.3
170,291 - H281DRAFT_04069 0.56 -0.8
170,294 + H281DRAFT_04069 0.57 -0.0
170,294 + H281DRAFT_04069 0.57 -0.4
170,294 + H281DRAFT_04069 0.57 -0.9
170,294 + H281DRAFT_04069 0.57 -0.7
170,295 - H281DRAFT_04069 0.57 -1.0
170,295 - H281DRAFT_04069 0.57 -0.8
170,295 - H281DRAFT_04069 0.57 -1.0
170,299 - H281DRAFT_04069 0.57 -1.6
170,379 + H281DRAFT_04069 0.62 -0.9
170,416 + H281DRAFT_04069 0.64 -0.3
170,416 + H281DRAFT_04069 0.64 +0.7
170,416 + H281DRAFT_04069 0.64 -0.5
170,416 + H281DRAFT_04069 0.64 -0.4
170,416 + H281DRAFT_04069 0.64 -0.9
170,416 + H281DRAFT_04069 0.64 -0.4
170,417 - H281DRAFT_04069 0.64 -0.7
170,436 + H281DRAFT_04069 0.65 -0.5
170,473 + H281DRAFT_04069 0.68 -0.7
170,473 + H281DRAFT_04069 0.68 -0.8
170,474 - H281DRAFT_04069 0.68 -1.1
170,474 - H281DRAFT_04069 0.68 -0.2
170,710 + H281DRAFT_04069 0.83 -0.8
170,710 + H281DRAFT_04069 0.83 +0.4
170,710 + H281DRAFT_04069 0.83 -1.0
170,711 - H281DRAFT_04069 0.83 -0.6
170,711 - H281DRAFT_04069 0.83 -0.4
170,768 + H281DRAFT_04069 0.86 -1.5
170,791 + H281DRAFT_04069 0.88 -1.2
170,791 + H281DRAFT_04069 0.88 -0.5
170,791 + H281DRAFT_04069 0.88 -0.2
170,792 - H281DRAFT_04069 0.88 -0.9
170,794 + H281DRAFT_04069 0.88 -1.4
170,849 + -0.8
170,849 + +0.1
170,849 + +0.2
170,850 - -1.0
170,850 - -0.3
170,850 - -0.9
170,850 - -0.8
171,035 + +0.2
171,036 - +1.0
171,072 + -1.7
171,408 + H281DRAFT_04070 0.38 -0.7
171,409 - H281DRAFT_04070 0.38 -0.8
171,454 - H281DRAFT_04070 0.43 -1.7
171,514 + H281DRAFT_04070 0.50 -1.2
171,534 + H281DRAFT_04070 0.52 -0.4
171,564 - H281DRAFT_04070 0.55 -0.9
171,602 - H281DRAFT_04070 0.59 -0.7
171,886 - H281DRAFT_04070 0.90 -1.5
171,936 + -0.9

Or see this region's nucleotide sequence