Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03852

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03851 and H281DRAFT_03852 are separated by 150 nucleotidesH281DRAFT_03852 and H281DRAFT_03853 are separated by 490 nucleotides H281DRAFT_03851: H281DRAFT_03851 - Outer membrane protein (porin), at 380,185 to 381,315 _03851 H281DRAFT_03852: H281DRAFT_03852 - Nitroreductase, at 381,466 to 382,167 _03852 H281DRAFT_03853: H281DRAFT_03853 - UTP:GlnB (protein PII) uridylyltransferase, at 382,658 to 383,341 _03853 Position (kb) 381 382 383Strain fitness (log2 ratio) -1 0 1at 380.549 kb on - strand, within H281DRAFT_03851at 380.591 kb on - strand, within H281DRAFT_03851at 380.617 kb on - strand, within H281DRAFT_03851at 380.815 kb on + strand, within H281DRAFT_03851at 380.888 kb on + strand, within H281DRAFT_03851at 380.999 kb on + strand, within H281DRAFT_03851at 381.185 kb on - strand, within H281DRAFT_03851at 381.203 kb on + strandat 381.204 kb on - strandat 381.281 kb on + strandat 381.281 kb on + strandat 381.397 kb on + strandat 381.938 kb on + strand, within H281DRAFT_03852at 381.938 kb on + strand, within H281DRAFT_03852at 381.939 kb on - strand, within H281DRAFT_03852at 382.049 kb on - strand, within H281DRAFT_03852at 382.378 kb on + strandat 382.642 kb on + strandat 382.812 kb on - strandat 382.812 kb on - strand, within H281DRAFT_03853

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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380,549 - H281DRAFT_03851 0.32 +0.2
380,591 - H281DRAFT_03851 0.36 +0.6
380,617 - H281DRAFT_03851 0.38 +1.0
380,815 + H281DRAFT_03851 0.56 +0.3
380,888 + H281DRAFT_03851 0.62 +0.2
380,999 + H281DRAFT_03851 0.72 +0.7
381,185 - H281DRAFT_03851 0.88 -0.2
381,203 + -0.8
381,204 - +0.7
381,281 + -0.8
381,281 + +0.2
381,397 + -0.1
381,938 + H281DRAFT_03852 0.67 +0.2
381,938 + H281DRAFT_03852 0.67 +0.9
381,939 - H281DRAFT_03852 0.67 -0.3
382,049 - H281DRAFT_03852 0.83 +1.1
382,378 + +0.7
382,642 + +0.5
382,812 - +0.7
382,812 - H281DRAFT_03853 0.23 +0.4

Or see this region's nucleotide sequence