Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03610

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03609 and H281DRAFT_03610 overlap by 4 nucleotidesH281DRAFT_03610 and H281DRAFT_03611 are separated by 3 nucleotidesH281DRAFT_03611 and H281DRAFT_03612 are separated by 46 nucleotides H281DRAFT_03609: H281DRAFT_03609 - squalene-associated FAD-dependent desaturase, at 117,671 to 118,921 _03609 H281DRAFT_03610: H281DRAFT_03610 - squalene-hopene/tetraprenyl-beta-curcumene cyclase, at 118,918 to 120,978 _03610 H281DRAFT_03611: H281DRAFT_03611 - hopanoid-associated phosphorylase, at 120,982 to 121,710 _03611 H281DRAFT_03612: H281DRAFT_03612 - phospholipid-binding lipoprotein MlaA, at 121,757 to 122,827 _03612 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -1 0 1at 118.031 kb on + strand, within H281DRAFT_03609at 118.610 kb on + strand, within H281DRAFT_03609at 118.802 kb on - strandat 118.888 kb on + strandat 118.929 kb on - strandat 119.182 kb on + strand, within H281DRAFT_03610at 119.314 kb on + strand, within H281DRAFT_03610at 119.470 kb on - strandat 119.571 kb on - strandat 119.860 kb on + strand, within H281DRAFT_03610at 119.861 kb on - strand, within H281DRAFT_03610at 120.160 kb on + strand, within H281DRAFT_03610at 120.331 kb on + strand, within H281DRAFT_03610at 120.332 kb on - strand, within H281DRAFT_03610at 120.334 kb on + strand, within H281DRAFT_03610at 120.476 kb on - strand, within H281DRAFT_03610at 120.538 kb on + strand, within H281DRAFT_03610at 120.539 kb on - strand, within H281DRAFT_03610at 120.797 kb on - strandat 120.976 kb on + strandat 120.977 kb on - strandat 120.977 kb on - strandat 121.100 kb on - strand, within H281DRAFT_03611at 121.206 kb on - strand, within H281DRAFT_03611at 121.510 kb on - strandat 121.510 kb on - strand, within H281DRAFT_03611at 121.759 kb on - strandat 121.759 kb on - strandat 121.759 kb on - strandat 121.759 kb on - strandat 121.793 kb on - strandat 121.793 kb on - strandat 121.888 kb on + strand, within H281DRAFT_03612

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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118,031 + H281DRAFT_03609 0.29 -0.7
118,610 + H281DRAFT_03609 0.75 -0.5
118,802 - -0.4
118,888 + -0.9
118,929 - +0.2
119,182 + H281DRAFT_03610 0.13 +0.5
119,314 + H281DRAFT_03610 0.19 +0.0
119,470 - -1.3
119,571 - +0.3
119,860 + H281DRAFT_03610 0.46 +1.2
119,861 - H281DRAFT_03610 0.46 -0.1
120,160 + H281DRAFT_03610 0.60 -0.6
120,331 + H281DRAFT_03610 0.69 +0.3
120,332 - H281DRAFT_03610 0.69 +0.8
120,334 + H281DRAFT_03610 0.69 +1.5
120,476 - H281DRAFT_03610 0.76 +1.1
120,538 + H281DRAFT_03610 0.79 +1.0
120,539 - H281DRAFT_03610 0.79 -0.4
120,797 - +0.8
120,976 + +0.0
120,977 - -1.0
120,977 - +0.3
121,100 - H281DRAFT_03611 0.16 +1.3
121,206 - H281DRAFT_03611 0.31 -0.1
121,510 - -0.5
121,510 - H281DRAFT_03611 0.72 +0.1
121,759 - -0.4
121,759 - -0.2
121,759 - +0.3
121,759 - -0.8
121,793 - +0.5
121,793 - -0.3
121,888 + H281DRAFT_03612 0.12 +0.2

Or see this region's nucleotide sequence