Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03300

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03299 and H281DRAFT_03300 overlap by 17 nucleotidesH281DRAFT_03300 and H281DRAFT_03301 are separated by 249 nucleotides H281DRAFT_03299: H281DRAFT_03299 - cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein, at 359,519 to 360,532 _03299 H281DRAFT_03300: H281DRAFT_03300 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein, at 360,516 to 361,964 _03300 H281DRAFT_03301: H281DRAFT_03301 - oxidoreductase alpha (molybdopterin) subunit, at 362,214 to 364,520 _03301 Position (kb) 360 361 362Strain fitness (log2 ratio) -1 0 1at 359.566 kb on - strandat 359.571 kb on + strandat 360.014 kb on - strand, within H281DRAFT_03299at 360.059 kb on - strand, within H281DRAFT_03299at 360.800 kb on - strand, within H281DRAFT_03300at 361.056 kb on - strand, within H281DRAFT_03300at 361.862 kb on - strandat 361.862 kb on - strandat 362.043 kb on - strandat 362.360 kb on + strandat 362.436 kb on - strandat 362.697 kb on + strand, within H281DRAFT_03301at 362.698 kb on - strand, within H281DRAFT_03301at 362.724 kb on + strand, within H281DRAFT_03301

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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359,566 - +0.7
359,571 + +0.4
360,014 - H281DRAFT_03299 0.49 +0.2
360,059 - H281DRAFT_03299 0.53 -1.2
360,800 - H281DRAFT_03300 0.20 +0.6
361,056 - H281DRAFT_03300 0.37 +0.4
361,862 - -0.2
361,862 - +0.4
362,043 - -0.1
362,360 + +0.5
362,436 - +0.1
362,697 + H281DRAFT_03301 0.21 +0.9
362,698 - H281DRAFT_03301 0.21 +0.2
362,724 + H281DRAFT_03301 0.22 +0.4

Or see this region's nucleotide sequence