Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03117

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03116 and H281DRAFT_03117 are separated by 29 nucleotidesH281DRAFT_03117 and H281DRAFT_03118 overlap by 8 nucleotides H281DRAFT_03116: H281DRAFT_03116 - putative spermidine/putrescine transport system substrate-binding protein, at 149,008 to 150,054 _03116 H281DRAFT_03117: H281DRAFT_03117 - sarcosine oxidase subunit beta, at 150,084 to 151,211 _03117 H281DRAFT_03118: H281DRAFT_03118 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 151,204 to 152,637 _03118 Position (kb) 150 151 152Strain fitness (log2 ratio) -1 0 1at 149.313 kb on - strand, within H281DRAFT_03116at 149.426 kb on + strand, within H281DRAFT_03116at 149.427 kb on - strand, within H281DRAFT_03116at 149.652 kb on - strand, within H281DRAFT_03116at 149.652 kb on - strand, within H281DRAFT_03116at 149.652 kb on - strand, within H281DRAFT_03116at 149.854 kb on - strand, within H281DRAFT_03116at 150.102 kb on - strandat 150.656 kb on + strand, within H281DRAFT_03117at 151.056 kb on + strand, within H281DRAFT_03117at 151.250 kb on + strandat 151.251 kb on - strandat 151.251 kb on - strandat 151.456 kb on + strand, within H281DRAFT_03118at 152.009 kb on + strand, within H281DRAFT_03118

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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149,313 - H281DRAFT_03116 0.29 -0.2
149,426 + H281DRAFT_03116 0.40 -1.2
149,427 - H281DRAFT_03116 0.40 -0.1
149,652 - H281DRAFT_03116 0.62 -0.0
149,652 - H281DRAFT_03116 0.62 +0.2
149,652 - H281DRAFT_03116 0.62 +0.2
149,854 - H281DRAFT_03116 0.81 +0.8
150,102 - +0.7
150,656 + H281DRAFT_03117 0.51 +0.8
151,056 + H281DRAFT_03117 0.86 +0.3
151,250 + -0.1
151,251 - +0.2
151,251 - -0.2
151,456 + H281DRAFT_03118 0.18 +0.4
152,009 + H281DRAFT_03118 0.56 +0.1

Or see this region's nucleotide sequence