Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01147 and H281DRAFT_01148 are separated by 307 nucleotides H281DRAFT_01148 and H281DRAFT_01149 are separated by 0 nucleotides H281DRAFT_01149 and H281DRAFT_01150 overlap by 4 nucleotides
H281DRAFT_01147: H281DRAFT_01147 - hypothetical protein, at 1,296,329 to 1,296,781
_01147
H281DRAFT_01148: H281DRAFT_01148 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 1,297,089 to 1,297,748
_01148
H281DRAFT_01149: H281DRAFT_01149 - two-component system, OmpR family, sensor histidine kinase QseC, at 1,297,749 to 1,299,257
_01149
H281DRAFT_01150: H281DRAFT_01150 - putative membrane protein, at 1,299,254 to 1,300,351
_01150
Position (kb) 1297
1298
1299
1300 Strain fitness (log2 ratio) -1
0
1 at 1296.910 kb on + strand at 1296.911 kb on - strand at 1297.221 kb on + strand, within H281DRAFT_01148 at 1297.222 kb on - strand, within H281DRAFT_01148 at 1297.623 kb on + strand, within H281DRAFT_01148 at 1297.728 kb on + strand at 1298.158 kb on - strand, within H281DRAFT_01149 at 1299.219 kb on - strand at 1299.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 1,296,910 + -0.5 1,296,911 - +0.0 1,297,221 + H281DRAFT_01148 0.20 -0.2 1,297,222 - H281DRAFT_01148 0.20 -1.1 1,297,623 + H281DRAFT_01148 0.81 -1.1 1,297,728 + +0.5 1,298,158 - H281DRAFT_01149 0.27 +0.9 1,299,219 - +0.3 1,299,219 - -0.4
Or see this region's nucleotide sequence