Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00848

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00847 and H281DRAFT_00848 are separated by 38 nucleotidesH281DRAFT_00848 and H281DRAFT_00849 overlap by 4 nucleotides H281DRAFT_00847: H281DRAFT_00847 - Beta-barrel assembly machine subunit BamD, at 936,587 to 937,447 _00847 H281DRAFT_00848: H281DRAFT_00848 - ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-), at 937,486 to 938,763 _00848 H281DRAFT_00849: H281DRAFT_00849 - conserved hypothetical protein, at 938,760 to 939,620 _00849 Position (kb) 937 938 939Strain fitness (log2 ratio) -1 0 1 2at 936.491 kb on + strandat 936.492 kb on - strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.537 kb on - strandat 936.588 kb on + strandat 936.589 kb on - strandat 936.639 kb on + strandat 937.464 kb on - strandat 937.501 kb on - strandat 937.544 kb on - strandat 937.544 kb on - strandat 937.544 kb on - strandat 937.545 kb on + strandat 937.550 kb on + strandat 937.550 kb on + strandat 937.551 kb on - strandat 938.440 kb on + strand, within H281DRAFT_00848at 938.441 kb on - strand, within H281DRAFT_00848at 938.644 kb on + strandat 938.644 kb on + strandat 938.645 kb on - strandat 938.645 kb on - strandat 938.647 kb on + strandat 938.647 kb on + strandat 938.648 kb on - strandat 938.983 kb on + strand, within H281DRAFT_00849at 938.984 kb on - strand, within H281DRAFT_00849at 939.294 kb on + strand, within H281DRAFT_00849at 939.295 kb on - strand, within H281DRAFT_00849at 939.331 kb on + strand, within H281DRAFT_00849at 939.537 kb on + strandat 939.537 kb on + strandat 939.543 kb on + strandat 939.544 kb on - strandat 939.662 kb on + strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.727 kb on + strandat 939.728 kb on - strandat 939.735 kb on + strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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936,491 + -0.1
936,492 - +0.3
936,536 + +0.3
936,536 + -1.1
936,536 + +0.0
936,536 + +0.1
936,536 + -0.6
936,537 - -0.7
936,588 + -0.2
936,589 - -0.1
936,639 + +0.4
937,464 - +0.2
937,501 - +0.1
937,544 - +0.1
937,544 - +1.2
937,544 - +0.1
937,545 + +0.5
937,550 + -0.0
937,550 + -0.2
937,551 - +0.2
938,440 + H281DRAFT_00848 0.75 -0.1
938,441 - H281DRAFT_00848 0.75 +2.7
938,644 + -0.1
938,644 + -0.4
938,645 - -0.2
938,645 - +0.2
938,647 + +0.3
938,647 + +0.2
938,648 - +1.5
938,983 + H281DRAFT_00849 0.26 -0.3
938,984 - H281DRAFT_00849 0.26 +0.0
939,294 + H281DRAFT_00849 0.62 -0.4
939,295 - H281DRAFT_00849 0.62 -0.1
939,331 + H281DRAFT_00849 0.66 +0.1
939,537 + +0.7
939,537 + +0.1
939,543 + +0.5
939,544 - +0.4
939,662 + -0.3
939,663 - +0.5
939,663 - +0.9
939,663 - +0.6
939,727 + +0.1
939,728 - +0.6
939,735 + +0.4
939,736 - +1.8
939,736 - +0.4
939,736 - +0.0
939,736 - +0.7

Or see this region's nucleotide sequence