Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00327

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00325 and H281DRAFT_00326 are separated by 493 nucleotidesH281DRAFT_00326 and H281DRAFT_00327 are separated by 140 nucleotidesH281DRAFT_00327 and H281DRAFT_00328 are separated by 87 nucleotides H281DRAFT_00325: H281DRAFT_00325 - GAF modulated sigma54 specific transcriptional regulator, Fis family, at 354,608 to 356,581 _00325 H281DRAFT_00326: H281DRAFT_00326 - pyrroloquinoline quinone biosynthesis protein D, at 357,075 to 357,356 _00326 H281DRAFT_00327: H281DRAFT_00327 - amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-), at 357,497 to 358,747 _00327 H281DRAFT_00328: H281DRAFT_00328 - alcohol dehydrogenase (cytochrome c), at 358,835 to 360,562 _00328 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1at 356.525 kb on - strandat 356.532 kb on - strandat 356.803 kb on - strandat 356.845 kb on - strandat 356.883 kb on - strandat 356.918 kb on + strandat 356.918 kb on + strandat 356.919 kb on - strandat 356.919 kb on - strandat 356.919 kb on - strandat 356.919 kb on - strandat 356.921 kb on - strandat 356.934 kb on - strandat 357.003 kb on + strandat 357.013 kb on + strandat 357.224 kb on - strand, within H281DRAFT_00326at 357.393 kb on - strandat 357.393 kb on - strandat 357.393 kb on - strandat 357.400 kb on - strandat 357.404 kb on + strandat 357.509 kb on - strandat 357.606 kb on + strandat 357.687 kb on + strand, within H281DRAFT_00327at 357.688 kb on - strand, within H281DRAFT_00327at 357.810 kb on + strand, within H281DRAFT_00327at 357.810 kb on + strand, within H281DRAFT_00327at 358.335 kb on + strand, within H281DRAFT_00327at 358.336 kb on - strandat 358.402 kb on - strand, within H281DRAFT_00327at 358.860 kb on + strandat 358.956 kb on + strandat 359.143 kb on - strand, within H281DRAFT_00328at 359.259 kb on + strand, within H281DRAFT_00328at 359.260 kb on - strand, within H281DRAFT_00328at 359.311 kb on + strand, within H281DRAFT_00328at 359.312 kb on - strand, within H281DRAFT_00328at 359.312 kb on - strand, within H281DRAFT_00328at 359.334 kb on + strand, within H281DRAFT_00328at 359.335 kb on - strand, within H281DRAFT_00328at 359.445 kb on + strand, within H281DRAFT_00328at 359.485 kb on - strandat 359.523 kb on + strand, within H281DRAFT_00328at 359.557 kb on - strand, within H281DRAFT_00328at 359.571 kb on + strand, within H281DRAFT_00328at 359.610 kb on + strand, within H281DRAFT_00328at 359.611 kb on - strand, within H281DRAFT_00328at 359.641 kb on - strand, within H281DRAFT_00328

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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356,525 - +0.6
356,532 - +0.2
356,803 - +0.6
356,845 - -0.3
356,883 - -0.3
356,918 + -0.2
356,918 + +0.1
356,919 - -0.5
356,919 - +1.5
356,919 - +0.5
356,919 - +1.4
356,921 - +0.4
356,934 - +0.6
357,003 + +0.0
357,013 + -0.1
357,224 - H281DRAFT_00326 0.53 -0.1
357,393 - +0.9
357,393 - -0.7
357,393 - -0.1
357,400 - +1.1
357,404 + +0.7
357,509 - -0.2
357,606 + +0.4
357,687 + H281DRAFT_00327 0.15 -0.4
357,688 - H281DRAFT_00327 0.15 -0.3
357,810 + H281DRAFT_00327 0.25 -1.7
357,810 + H281DRAFT_00327 0.25 -0.3
358,335 + H281DRAFT_00327 0.67 +0.1
358,336 - +1.2
358,402 - H281DRAFT_00327 0.72 -1.5
358,860 + +0.3
358,956 + +0.5
359,143 - H281DRAFT_00328 0.18 -0.1
359,259 + H281DRAFT_00328 0.25 +0.6
359,260 - H281DRAFT_00328 0.25 +0.3
359,311 + H281DRAFT_00328 0.28 +0.2
359,312 - H281DRAFT_00328 0.28 +0.3
359,312 - H281DRAFT_00328 0.28 -0.6
359,334 + H281DRAFT_00328 0.29 +0.2
359,335 - H281DRAFT_00328 0.29 -0.7
359,445 + H281DRAFT_00328 0.35 +0.7
359,485 - -1.8
359,523 + H281DRAFT_00328 0.40 -0.2
359,557 - H281DRAFT_00328 0.42 +0.0
359,571 + H281DRAFT_00328 0.43 +0.1
359,610 + H281DRAFT_00328 0.45 +0.5
359,611 - H281DRAFT_00328 0.45 -0.4
359,641 - H281DRAFT_00328 0.47 +0.5

Or see this region's nucleotide sequence