Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00098

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00096 and H281DRAFT_00097 are separated by 26 nucleotidesH281DRAFT_00097 and H281DRAFT_00098 are separated by 315 nucleotidesH281DRAFT_00098 and H281DRAFT_00099 are separated by 73 nucleotides H281DRAFT_00096: H281DRAFT_00096 - Protein of unknown function (DUF3443), at 99,028 to 100,347 _00096 H281DRAFT_00097: H281DRAFT_00097 - Protein of unknown function (DUF2844), at 100,374 to 100,859 _00097 H281DRAFT_00098: H281DRAFT_00098 - non-heme chloroperoxidase, at 101,175 to 102,011 _00098 H281DRAFT_00099: H281DRAFT_00099 - autotransporter-associated beta strand repeat-containing protein, at 102,085 to 104,040 _00099 Position (kb) 101 102 103Strain fitness (log2 ratio) -1 0 1at 100.237 kb on - strandat 100.341 kb on + strandat 100.534 kb on + strand, within H281DRAFT_00097at 100.535 kb on - strand, within H281DRAFT_00097at 100.627 kb on + strand, within H281DRAFT_00097at 100.804 kb on + strand, within H281DRAFT_00097at 100.901 kb on + strandat 101.050 kb on + strandat 101.051 kb on - strandat 101.142 kb on + strandat 101.143 kb on - strandat 101.181 kb on + strandat 101.182 kb on - strandat 101.449 kb on + strand, within H281DRAFT_00098at 101.491 kb on - strand, within H281DRAFT_00098at 101.769 kb on + strand, within H281DRAFT_00098at 101.932 kb on - strandat 102.055 kb on + strandat 102.055 kb on + strandat 102.087 kb on - strandat 102.122 kb on + strandat 102.330 kb on - strand, within H281DRAFT_00099at 102.404 kb on - strand, within H281DRAFT_00099at 102.404 kb on - strand, within H281DRAFT_00099at 102.404 kb on - strand, within H281DRAFT_00099at 102.407 kb on + strand, within H281DRAFT_00099at 102.407 kb on + strand, within H281DRAFT_00099at 102.408 kb on - strand, within H281DRAFT_00099at 102.483 kb on - strand, within H281DRAFT_00099at 102.854 kb on + strand, within H281DRAFT_00099

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
100,237 - -0.1
100,341 + -0.7
100,534 + H281DRAFT_00097 0.33 -0.1
100,535 - H281DRAFT_00097 0.33 -0.7
100,627 + H281DRAFT_00097 0.52 -0.3
100,804 + H281DRAFT_00097 0.88 -0.1
100,901 + +0.0
101,050 + +0.8
101,051 - +0.5
101,142 + -0.5
101,143 - +0.1
101,181 + -0.2
101,182 - -0.6
101,449 + H281DRAFT_00098 0.33 -1.0
101,491 - H281DRAFT_00098 0.38 -0.3
101,769 + H281DRAFT_00098 0.71 -1.0
101,932 - +0.5
102,055 + -0.4
102,055 + +0.2
102,087 - -0.2
102,122 + +0.3
102,330 - H281DRAFT_00099 0.13 -0.1
102,404 - H281DRAFT_00099 0.16 -0.7
102,404 - H281DRAFT_00099 0.16 +0.0
102,404 - H281DRAFT_00099 0.16 -0.7
102,407 + H281DRAFT_00099 0.16 +0.0
102,407 + H281DRAFT_00099 0.16 -1.7
102,408 - H281DRAFT_00099 0.17 -0.0
102,483 - H281DRAFT_00099 0.20 +0.4
102,854 + H281DRAFT_00099 0.39 +0.1

Or see this region's nucleotide sequence