Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_873 and HP15_874 are separated by 50 nucleotides HP15_874 and HP15_875 are separated by 86 nucleotides HP15_875 and HP15_876 are separated by 27 nucleotides HP15_876 and HP15_877 overlap by 4 nucleotides
HP15_873: HP15_873 - conserved hypothetical protein, at 892,183 to 892,563
_873
HP15_874: HP15_874 - intracellular protease, PfpI family, at 892,614 to 893,183
_874
HP15_875: HP15_875 - protein containing DUF159, at 893,270 to 893,983
_875
HP15_876: HP15_876 - class I peptide chain release factor, at 894,011 to 894,424
_876
HP15_877: HP15_877 - lipase/esterase, at 894,421 to 895,491
_877
Position (kb) 893
894 Strain fitness (log2 ratio) -2
-1
0
1
2 at 892.282 kb on + strand, within HP15_873 at 892.341 kb on - strand, within HP15_873 at 892.416 kb on + strand, within HP15_873 at 892.531 kb on - strand at 892.531 kb on - strand at 892.580 kb on - strand at 892.580 kb on - strand at 892.706 kb on + strand, within HP15_874 at 892.788 kb on + strand, within HP15_874 at 892.902 kb on + strand, within HP15_874 at 892.910 kb on - strand, within HP15_874 at 893.018 kb on - strand, within HP15_874 at 893.110 kb on + strand, within HP15_874 at 893.261 kb on + strand at 893.267 kb on + strand at 893.275 kb on - strand at 893.337 kb on + strand at 893.416 kb on + strand, within HP15_875 at 893.424 kb on - strand, within HP15_875 at 893.465 kb on + strand, within HP15_875 at 893.471 kb on - strand, within HP15_875 at 893.540 kb on - strand, within HP15_875 at 893.662 kb on + strand, within HP15_875 at 893.712 kb on - strand, within HP15_875 at 893.901 kb on - strand, within HP15_875 at 893.944 kb on - strand at 893.978 kb on + strand at 893.995 kb on + strand at 894.010 kb on - strand at 894.030 kb on + strand at 894.062 kb on + strand, within HP15_876 at 894.073 kb on + strand, within HP15_876 at 894.098 kb on - strand, within HP15_876 at 894.406 kb on + strand at 894.413 kb on + strand at 894.414 kb on - strand at 894.418 kb on + strand at 894.433 kb on - strand at 894.459 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.478 kb on - strand at 894.478 kb on - strand at 894.478 kb on - strand at 894.478 kb on - strand at 894.487 kb on + strand at 894.601 kb on - strand, within HP15_877 at 894.618 kb on - strand, within HP15_877 at 894.647 kb on + strand, within HP15_877 at 894.647 kb on - strand, within HP15_877 at 894.647 kb on - strand, within HP15_877 at 894.666 kb on + strand, within HP15_877 at 894.733 kb on + strand, within HP15_877 at 894.760 kb on - strand, within HP15_877 at 894.774 kb on - strand, within HP15_877 at 894.784 kb on - strand, within HP15_877 at 894.842 kb on - strand, within HP15_877 at 894.980 kb on - strand, within HP15_877
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 892,282 + HP15_873 0.26 +0.3 892,341 - HP15_873 0.41 +1.6 892,416 + HP15_873 0.61 -2.5 892,531 - -0.5 892,531 - +0.4 892,580 - -0.3 892,580 - +0.4 892,706 + HP15_874 0.16 +1.0 892,788 + HP15_874 0.31 -0.2 892,902 + HP15_874 0.51 -0.7 892,910 - HP15_874 0.52 -0.0 893,018 - HP15_874 0.71 -0.7 893,110 + HP15_874 0.87 +0.0 893,261 + -0.9 893,267 + -1.0 893,275 - +0.3 893,337 + +0.1 893,416 + HP15_875 0.20 -0.8 893,424 - HP15_875 0.22 -0.5 893,465 + HP15_875 0.27 +0.5 893,471 - HP15_875 0.28 +1.2 893,540 - HP15_875 0.38 -0.9 893,662 + HP15_875 0.55 -0.1 893,712 - HP15_875 0.62 -0.3 893,901 - HP15_875 0.88 -0.9 893,944 - -0.3 893,978 + -1.3 893,995 + +0.1 894,010 - +0.5 894,030 + -0.1 894,062 + HP15_876 0.12 +1.1 894,073 + HP15_876 0.15 -0.2 894,098 - HP15_876 0.21 +0.5 894,406 + +1.0 894,413 + +0.1 894,414 - -0.9 894,418 + +1.8 894,433 - -0.4 894,459 + -0.0 894,470 + -0.5 894,470 + +0.3 894,470 + +0.5 894,470 + +1.4 894,478 - +0.3 894,478 - +1.4 894,478 - +0.9 894,478 - +0.0 894,487 + -0.4 894,601 - HP15_877 0.17 -2.5 894,618 - HP15_877 0.18 +0.8 894,647 + HP15_877 0.21 +0.6 894,647 - HP15_877 0.21 +0.3 894,647 - HP15_877 0.21 -0.2 894,666 + HP15_877 0.23 +2.0 894,733 + HP15_877 0.29 +1.3 894,760 - HP15_877 0.32 +0.4 894,774 - HP15_877 0.33 +0.2 894,784 - HP15_877 0.34 +0.5 894,842 - HP15_877 0.39 -0.2 894,980 - HP15_877 0.52 -1.1
Or see this region's nucleotide sequence