Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_865 and HP15_866 overlap by 10 nucleotides HP15_866 and HP15_867 are separated by 37 nucleotides HP15_867 and HP15_868 are separated by 21 nucleotides HP15_868 and HP15_869 are separated by 88 nucleotides HP15_869 and HP15_870 are separated by 99 nucleotides
HP15_865: HP15_865 - abortive infection protein, at 886,883 to 887,473
_865
HP15_866: HP15_866 - conserved hypothetical protein, membrane, at 887,464 to 887,883
_866
HP15_867: HP15_867 - protein containing AIG2-like domain, at 887,921 to 888,274
_867
HP15_868: HP15_868 - transcriptional regulator, LysR family, at 888,296 to 889,177
_868
HP15_869: HP15_869 - lysine exporter protein (LYSE/YGGA), at 889,266 to 889,871
_869
HP15_870: HP15_870 - conserved hypothetical protein, membrane, at 889,971 to 890,444
_870
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 887.318 kb on + strand, within HP15_865 at 887.367 kb on - strand, within HP15_865 at 887.376 kb on + strand, within HP15_865 at 887.424 kb on + strand at 887.432 kb on - strand at 887.432 kb on - strand at 887.513 kb on - strand, within HP15_866 at 887.545 kb on + strand, within HP15_866 at 887.589 kb on + strand, within HP15_866 at 887.667 kb on + strand, within HP15_866 at 887.776 kb on - strand, within HP15_866 at 887.862 kb on + strand at 887.921 kb on - strand at 887.988 kb on + strand, within HP15_867 at 887.994 kb on + strand, within HP15_867 at 888.214 kb on + strand, within HP15_867 at 888.237 kb on + strand, within HP15_867 at 888.338 kb on + strand at 888.355 kb on - strand at 888.402 kb on - strand, within HP15_868 at 888.402 kb on - strand, within HP15_868 at 888.473 kb on + strand, within HP15_868 at 888.481 kb on - strand, within HP15_868 at 888.685 kb on - strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.732 kb on + strand, within HP15_868 at 888.923 kb on - strand, within HP15_868 at 888.946 kb on + strand, within HP15_868 at 889.015 kb on - strand, within HP15_868 at 889.134 kb on - strand at 889.135 kb on + strand at 889.152 kb on - strand at 889.288 kb on + strand at 889.399 kb on - strand, within HP15_869 at 889.413 kb on - strand, within HP15_869 at 889.414 kb on + strand, within HP15_869 at 889.449 kb on - strand, within HP15_869 at 889.449 kb on - strand, within HP15_869 at 889.601 kb on + strand, within HP15_869 at 889.601 kb on + strand, within HP15_869 at 889.723 kb on - strand, within HP15_869 at 889.735 kb on + strand, within HP15_869 at 889.743 kb on - strand, within HP15_869 at 889.837 kb on + strand at 889.955 kb on - strand at 890.040 kb on + strand, within HP15_870 at 890.060 kb on - strand, within HP15_870 at 890.139 kb on + strand, within HP15_870 at 890.155 kb on - strand, within HP15_870
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 887,318 + HP15_865 0.74 -0.9 887,367 - HP15_865 0.82 -0.4 887,376 + HP15_865 0.83 -0.3 887,424 + +1.6 887,432 - +0.3 887,432 - +1.3 887,513 - HP15_866 0.12 +1.8 887,545 + HP15_866 0.19 +1.2 887,589 + HP15_866 0.30 +0.8 887,667 + HP15_866 0.48 +0.3 887,776 - HP15_866 0.74 +0.5 887,862 + -0.2 887,921 - -0.5 887,988 + HP15_867 0.19 -1.0 887,994 + HP15_867 0.21 -0.2 888,214 + HP15_867 0.83 +0.8 888,237 + HP15_867 0.89 +0.6 888,338 + -0.4 888,355 - +0.9 888,402 - HP15_868 0.12 -0.1 888,402 - HP15_868 0.12 -0.8 888,473 + HP15_868 0.20 -0.8 888,481 - HP15_868 0.21 -0.9 888,685 - HP15_868 0.44 +0.1 888,732 + HP15_868 0.49 -1.9 888,732 + HP15_868 0.49 +0.1 888,732 + HP15_868 0.49 -0.9 888,923 - HP15_868 0.71 +0.5 888,946 + HP15_868 0.74 +0.8 889,015 - HP15_868 0.82 -1.1 889,134 - +0.0 889,135 + +0.9 889,152 - +0.3 889,288 + -0.1 889,399 - HP15_869 0.22 +0.4 889,413 - HP15_869 0.24 +0.3 889,414 + HP15_869 0.24 -0.0 889,449 - HP15_869 0.30 -0.2 889,449 - HP15_869 0.30 -0.1 889,601 + HP15_869 0.55 +0.4 889,601 + HP15_869 0.55 -0.0 889,723 - HP15_869 0.75 -0.1 889,735 + HP15_869 0.77 +0.7 889,743 - HP15_869 0.79 +0.7 889,837 + +0.0 889,955 - -0.0 890,040 + HP15_870 0.15 +0.7 890,060 - HP15_870 0.19 -0.9 890,139 + HP15_870 0.35 -0.1 890,155 - HP15_870 0.39 -0.6
Or see this region's nucleotide sequence