Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_850 and HP15_851 are separated by 24 nucleotides HP15_851 and HP15_852 are separated by 25 nucleotides HP15_852 and HP15_853 are separated by 18 nucleotides
HP15_850: HP15_850 - GGDEF domain protein, at 868,352 to 869,392
_850
HP15_851: HP15_851 - integral membrane protein-like protein, at 869,417 to 869,872
_851
HP15_852: HP15_852 - MaoC-like dehydratase, at 869,898 to 870,368
_852
HP15_853: HP15_853 - RIO1/ZK632.3/MJ0444 family protein, at 870,387 to 871,283
_853
Position (kb) 869
870 Strain fitness (log2 ratio) -2
-1
0
1 at 868.436 kb on - strand at 868.562 kb on + strand, within HP15_850 at 868.570 kb on - strand, within HP15_850 at 868.702 kb on - strand, within HP15_850 at 868.720 kb on - strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.794 kb on - strand, within HP15_850 at 869.077 kb on - strand, within HP15_850 at 869.102 kb on + strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.124 kb on - strand, within HP15_850 at 869.135 kb on - strand, within HP15_850 at 869.191 kb on - strand, within HP15_850 at 869.311 kb on - strand at 869.370 kb on + strand at 869.385 kb on - strand at 869.454 kb on - strand at 869.586 kb on + strand, within HP15_851 at 869.786 kb on - strand, within HP15_851 at 869.837 kb on - strand at 869.867 kb on + strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.984 kb on - strand, within HP15_852 at 870.048 kb on + strand, within HP15_852 at 870.055 kb on - strand, within HP15_852 at 870.100 kb on + strand, within HP15_852 at 870.195 kb on - strand, within HP15_852 at 870.233 kb on + strand, within HP15_852 at 870.377 kb on + strand at 870.403 kb on - strand at 870.538 kb on + strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.584 kb on + strand, within HP15_853 at 870.820 kb on - strand, within HP15_853 at 870.858 kb on - strand, within HP15_853
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 868,436 - -0.9 868,562 + HP15_850 0.20 +0.2 868,570 - HP15_850 0.21 -0.1 868,702 - HP15_850 0.34 -0.3 868,720 - HP15_850 0.35 -0.6 868,784 + HP15_850 0.41 +1.1 868,784 + HP15_850 0.41 +0.4 868,784 + HP15_850 0.41 -0.1 868,792 - HP15_850 0.42 -1.3 868,792 - HP15_850 0.42 -0.1 868,792 - HP15_850 0.42 -0.0 868,792 - HP15_850 0.42 +0.1 868,792 - HP15_850 0.42 +0.3 868,794 - HP15_850 0.42 -0.8 869,077 - HP15_850 0.70 -0.4 869,102 + HP15_850 0.72 -0.4 869,110 - HP15_850 0.73 -1.7 869,110 - HP15_850 0.73 +0.0 869,124 - HP15_850 0.74 +0.5 869,135 - HP15_850 0.75 +0.7 869,191 - HP15_850 0.81 -0.0 869,311 - -0.1 869,370 + +0.7 869,385 - -0.7 869,454 - +0.4 869,586 + HP15_851 0.37 -0.7 869,786 - HP15_851 0.81 -0.0 869,837 - +0.8 869,867 + +1.3 869,875 - +0.3 869,875 - -1.5 869,875 - -0.1 869,984 - HP15_852 0.18 +0.1 870,048 + HP15_852 0.32 -0.3 870,055 - HP15_852 0.33 +0.0 870,100 + HP15_852 0.43 -0.1 870,195 - HP15_852 0.63 +0.1 870,233 + HP15_852 0.71 +0.6 870,377 + -2.1 870,403 - +1.0 870,538 + HP15_853 0.17 +1.6 870,582 - HP15_853 0.22 -0.7 870,582 - HP15_853 0.22 +0.5 870,584 + HP15_853 0.22 +0.1 870,820 - HP15_853 0.48 -0.3 870,858 - HP15_853 0.53 -0.2
Or see this region's nucleotide sequence