Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_828 and HP15_829 are separated by 48 nucleotides HP15_829 and HP15_830 are separated by 353 nucleotides HP15_830 and HP15_831 are separated by 2 nucleotides
HP15_828: HP15_828 - conserved hypothetical protein, at 845,204 to 846,595
_828
HP15_829: HP15_829 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 846,644 to 848,146
_829
HP15_830: HP15_830 - conserved hypothetical protein, at 848,500 to 849,003
_830
HP15_831: HP15_831 - protein containing glutaredoxin domain, at 849,006 to 849,806
_831
Position (kb) 846
847
848
849 Strain fitness (log2 ratio) -1
0
1
2 at 845.645 kb on - strand, within HP15_828 at 845.694 kb on + strand, within HP15_828 at 845.814 kb on + strand, within HP15_828 at 845.924 kb on + strand, within HP15_828 at 845.924 kb on + strand, within HP15_828 at 845.932 kb on - strand, within HP15_828 at 845.956 kb on - strand, within HP15_828 at 846.099 kb on - strand, within HP15_828 at 846.157 kb on - strand, within HP15_828 at 846.172 kb on + strand, within HP15_828 at 846.426 kb on - strand, within HP15_828 at 846.475 kb on + strand at 846.493 kb on - strand at 846.563 kb on - strand at 846.592 kb on + strand at 846.658 kb on + strand at 847.345 kb on + strand, within HP15_829 at 847.502 kb on - strand, within HP15_829 at 847.536 kb on + strand, within HP15_829 at 847.763 kb on - strand, within HP15_829 at 848.017 kb on + strand at 848.534 kb on - strand at 848.608 kb on + strand, within HP15_830 at 848.608 kb on + strand, within HP15_830 at 848.733 kb on + strand, within HP15_830 at 848.956 kb on - strand at 848.956 kb on - strand at 848.958 kb on + strand at 848.966 kb on - strand at 848.966 kb on - strand at 848.966 kb on - strand at 848.966 kb on - strand at 849.107 kb on - strand, within HP15_831
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 845,645 - HP15_828 0.32 -0.0 845,694 + HP15_828 0.35 +0.2 845,814 + HP15_828 0.44 +1.3 845,924 + HP15_828 0.52 -0.4 845,924 + HP15_828 0.52 +1.0 845,932 - HP15_828 0.52 +0.6 845,956 - HP15_828 0.54 -0.3 846,099 - HP15_828 0.64 -1.2 846,157 - HP15_828 0.68 +0.5 846,172 + HP15_828 0.70 -0.5 846,426 - HP15_828 0.88 +0.1 846,475 + -0.1 846,493 - -0.0 846,563 - -0.0 846,592 + -0.5 846,658 + -1.5 847,345 + HP15_829 0.47 -0.8 847,502 - HP15_829 0.57 +0.0 847,536 + HP15_829 0.59 -1.3 847,763 - HP15_829 0.74 -0.3 848,017 + -1.0 848,534 - +0.5 848,608 + HP15_830 0.21 +1.8 848,608 + HP15_830 0.21 +0.3 848,733 + HP15_830 0.46 +0.2 848,956 - -0.4 848,956 - -0.4 848,958 + +0.7 848,966 - +0.9 848,966 - -0.2 848,966 - -0.3 848,966 - +0.6 849,107 - HP15_831 0.13 -0.3
Or see this region's nucleotide sequence