Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_823 and HP15_824 overlap by 1 nucleotides HP15_824 and HP15_825 are separated by 17 nucleotides HP15_825 and HP15_826 are separated by 61 nucleotides
HP15_823: HP15_823 - phosphotransferase enzyme family protein, at 841,160 to 842,224
_823
HP15_824: HP15_824 - phosphoglycerate mutase family protein, at 842,224 to 842,913
_824
HP15_825: HP15_825 - short-chain dehydrogenase/reductase SDR, at 842,931 to 843,701
_825
HP15_826: HP15_826 - lipoprotein, at 843,763 to 844,641
_826
Position (kb) 842
843 Strain fitness (log2 ratio) -2
-1
0
1
2 at 841.330 kb on + strand, within HP15_823 at 841.504 kb on + strand, within HP15_823 at 841.512 kb on + strand, within HP15_823 at 841.572 kb on + strand, within HP15_823 at 841.629 kb on + strand, within HP15_823 at 841.642 kb on - strand, within HP15_823 at 841.656 kb on - strand, within HP15_823 at 841.663 kb on - strand, within HP15_823 at 841.690 kb on + strand, within HP15_823 at 841.708 kb on + strand, within HP15_823 at 841.726 kb on + strand, within HP15_823 at 841.767 kb on + strand, within HP15_823 at 841.777 kb on - strand, within HP15_823 at 841.857 kb on + strand, within HP15_823 at 841.859 kb on + strand, within HP15_823 at 841.867 kb on - strand, within HP15_823 at 841.926 kb on + strand, within HP15_823 at 841.934 kb on - strand, within HP15_823 at 842.022 kb on + strand, within HP15_823 at 842.108 kb on + strand, within HP15_823 at 842.313 kb on - strand, within HP15_824 at 842.342 kb on - strand, within HP15_824 at 842.480 kb on - strand, within HP15_824 at 842.587 kb on + strand, within HP15_824 at 842.800 kb on + strand, within HP15_824 at 842.955 kb on - strand at 843.150 kb on - strand, within HP15_825 at 843.185 kb on - strand, within HP15_825 at 843.185 kb on - strand, within HP15_825 at 843.185 kb on - strand, within HP15_825 at 843.185 kb on - strand, within HP15_825 at 843.251 kb on - strand, within HP15_825 at 843.382 kb on + strand, within HP15_825 at 843.426 kb on - strand, within HP15_825 at 843.452 kb on - strand, within HP15_825 at 843.473 kb on + strand, within HP15_825 at 843.507 kb on - strand, within HP15_825 at 843.507 kb on - strand, within HP15_825 at 843.507 kb on - strand, within HP15_825 at 843.512 kb on - strand, within HP15_825 at 843.663 kb on - strand at 843.752 kb on + strand at 843.760 kb on - strand at 843.778 kb on + strand at 843.778 kb on + strand at 843.778 kb on + strand at 843.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 841,330 + HP15_823 0.16 +0.0 841,504 + HP15_823 0.32 +1.7 841,512 + HP15_823 0.33 -0.1 841,572 + HP15_823 0.39 -0.8 841,629 + HP15_823 0.44 -0.4 841,642 - HP15_823 0.45 -0.4 841,656 - HP15_823 0.47 -0.9 841,663 - HP15_823 0.47 +0.5 841,690 + HP15_823 0.50 +1.4 841,708 + HP15_823 0.51 -0.3 841,726 + HP15_823 0.53 +1.8 841,767 + HP15_823 0.57 +0.4 841,777 - HP15_823 0.58 +1.5 841,857 + HP15_823 0.65 -0.4 841,859 + HP15_823 0.66 -0.5 841,867 - HP15_823 0.66 -0.1 841,926 + HP15_823 0.72 +0.8 841,934 - HP15_823 0.73 -0.2 842,022 + HP15_823 0.81 -0.7 842,108 + HP15_823 0.89 +0.2 842,313 - HP15_824 0.13 -1.1 842,342 - HP15_824 0.17 -1.1 842,480 - HP15_824 0.37 -1.2 842,587 + HP15_824 0.53 -0.1 842,800 + HP15_824 0.83 +0.5 842,955 - -0.5 843,150 - HP15_825 0.28 -0.3 843,185 - HP15_825 0.33 -0.5 843,185 - HP15_825 0.33 +0.8 843,185 - HP15_825 0.33 -0.5 843,185 - HP15_825 0.33 +0.9 843,251 - HP15_825 0.42 +0.0 843,382 + HP15_825 0.58 +1.5 843,426 - HP15_825 0.64 +1.2 843,452 - HP15_825 0.68 -0.1 843,473 + HP15_825 0.70 -2.0 843,507 - HP15_825 0.75 +0.7 843,507 - HP15_825 0.75 +1.5 843,507 - HP15_825 0.75 -0.2 843,512 - HP15_825 0.75 -0.0 843,663 - +0.6 843,752 + +0.0 843,760 - +0.4 843,778 + +0.9 843,778 + -0.5 843,778 + +0.2 843,844 - +0.4
Or see this region's nucleotide sequence