Strain Fitness in Marinobacter adhaerens HP15 around HP15_686

Experiment: D-Alanine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_685 and HP15_686 are separated by 35 nucleotidesHP15_686 and HP15_687 are separated by 23 nucleotides HP15_685: HP15_685 - phage repressor, at 701,983 to 702,966 _685 HP15_686: HP15_686 - conserved hypothetical protein, at 703,002 to 703,913 _686 HP15_687: HP15_687 - protein containing domain of unknown function DUF1994, at 703,937 to 704,788 _687 Position (kb) 703 704Strain fitness (log2 ratio) -2 -1 0 1 2at 702.986 kb on + strandat 703.046 kb on - strandat 703.046 kb on - strandat 703.107 kb on + strand, within HP15_686at 703.147 kb on - strand, within HP15_686at 703.147 kb on - strand, within HP15_686at 703.279 kb on - strand, within HP15_686at 703.286 kb on + strand, within HP15_686at 703.294 kb on - strand, within HP15_686at 703.340 kb on - strand, within HP15_686at 703.344 kb on + strand, within HP15_686at 703.549 kb on + strand, within HP15_686at 703.551 kb on - strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.743 kb on - strand, within HP15_686at 704.053 kb on - strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.307 kb on + strand, within HP15_687at 704.307 kb on + strand, within HP15_687at 704.315 kb on - strand, within HP15_687at 704.365 kb on + strand, within HP15_687at 704.371 kb on - strand, within HP15_687at 704.378 kb on + strand, within HP15_687at 704.469 kb on + strand, within HP15_687at 704.476 kb on - strand, within HP15_687at 704.635 kb on - strand, within HP15_687at 704.638 kb on + strand, within HP15_687at 704.708 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine
remove
702,986 + +1.3
703,046 - +1.5
703,046 - +0.5
703,107 + HP15_686 0.12 -0.1
703,147 - HP15_686 0.16 +2.0
703,147 - HP15_686 0.16 +0.9
703,279 - HP15_686 0.30 +1.4
703,286 + HP15_686 0.31 -1.0
703,294 - HP15_686 0.32 -2.5
703,340 - HP15_686 0.37 +0.2
703,344 + HP15_686 0.38 +1.4
703,549 + HP15_686 0.60 -0.1
703,551 - HP15_686 0.60 +1.3
703,735 + HP15_686 0.80 +0.2
703,735 + HP15_686 0.80 +0.9
703,735 + HP15_686 0.80 +1.3
703,735 + HP15_686 0.80 +0.9
703,743 - HP15_686 0.81 +1.0
704,053 - HP15_687 0.14 +0.8
704,107 + HP15_687 0.20 +0.4
704,107 + HP15_687 0.20 +0.8
704,107 + HP15_687 0.20 +0.1
704,107 + HP15_687 0.20 -0.0
704,107 + HP15_687 0.20 +0.5
704,107 + HP15_687 0.20 +0.2
704,107 + HP15_687 0.20 -0.1
704,107 + HP15_687 0.20 +0.9
704,107 + HP15_687 0.20 -0.2
704,107 + HP15_687 0.20 -0.1
704,115 - HP15_687 0.21 -0.7
704,115 - HP15_687 0.21 -0.1
704,115 - HP15_687 0.21 -0.1
704,115 - HP15_687 0.21 +1.0
704,115 - HP15_687 0.21 +0.1
704,115 - HP15_687 0.21 -0.2
704,115 - HP15_687 0.21 +0.2
704,307 + HP15_687 0.43 +0.1
704,307 + HP15_687 0.43 -0.1
704,315 - HP15_687 0.44 -0.5
704,365 + HP15_687 0.50 +0.3
704,371 - HP15_687 0.51 -1.2
704,378 + HP15_687 0.52 +1.0
704,469 + HP15_687 0.62 -0.1
704,476 - HP15_687 0.63 +0.6
704,635 - HP15_687 0.82 -0.2
704,638 + HP15_687 0.82 +0.2
704,708 - +0.8

Or see this region's nucleotide sequence