Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_641 and HP15_642 are separated by 1 nucleotides HP15_642 and HP15_643 are separated by 80 nucleotides HP15_643 and HP15_644 are separated by 304 nucleotides
HP15_641: HP15_641 - homocysteine synthase, at 665,040 to 666,317
_641
HP15_642: HP15_642 - membrane protein, at 666,319 to 666,579
_642
HP15_643: HP15_643 - transmembrane pair domain protein, at 666,660 to 667,094
_643
HP15_644: HP15_644 - conserved hypothetical protein, secreted, at 667,399 to 668,142
_644
Position (kb) 666
667 Strain fitness (log2 ratio) -2
-1
0
1
2 at 665.453 kb on + strand, within HP15_641 at 665.491 kb on - strand, within HP15_641 at 665.496 kb on - strand, within HP15_641 at 665.523 kb on - strand, within HP15_641 at 665.531 kb on - strand, within HP15_641 at 665.561 kb on + strand, within HP15_641 at 665.561 kb on + strand, within HP15_641 at 665.562 kb on + strand, within HP15_641 at 665.570 kb on + strand, within HP15_641 at 665.570 kb on + strand, within HP15_641 at 665.583 kb on - strand, within HP15_641 at 665.583 kb on - strand, within HP15_641 at 665.608 kb on - strand, within HP15_641 at 665.625 kb on + strand, within HP15_641 at 665.763 kb on - strand, within HP15_641 at 665.889 kb on + strand, within HP15_641 at 665.946 kb on - strand, within HP15_641 at 665.981 kb on + strand, within HP15_641 at 666.032 kb on + strand, within HP15_641 at 666.065 kb on - strand, within HP15_641 at 666.111 kb on - strand, within HP15_641 at 666.171 kb on + strand, within HP15_641 at 666.179 kb on - strand, within HP15_641 at 666.222 kb on + strand at 666.223 kb on + strand at 666.223 kb on - strand at 666.266 kb on - strand at 666.296 kb on + strand at 666.296 kb on + strand at 666.304 kb on - strand at 666.361 kb on - strand, within HP15_642 at 666.385 kb on - strand, within HP15_642 at 666.522 kb on + strand, within HP15_642 at 666.739 kb on + strand, within HP15_643 at 666.914 kb on + strand, within HP15_643 at 666.947 kb on - strand, within HP15_643 at 666.968 kb on - strand, within HP15_643 at 667.008 kb on + strand, within HP15_643 at 667.034 kb on + strand, within HP15_643 at 667.057 kb on - strand at 667.143 kb on + strand at 667.143 kb on + strand at 667.151 kb on - strand at 667.151 kb on - strand at 667.220 kb on + strand at 667.259 kb on - strand at 667.321 kb on + strand at 667.371 kb on - strand at 667.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 665,453 + HP15_641 0.32 +0.1 665,491 - HP15_641 0.35 +0.6 665,496 - HP15_641 0.36 +1.1 665,523 - HP15_641 0.38 -0.3 665,531 - HP15_641 0.38 -1.9 665,561 + HP15_641 0.41 +0.4 665,561 + HP15_641 0.41 -0.6 665,562 + HP15_641 0.41 +2.5 665,570 + HP15_641 0.41 +2.7 665,570 + HP15_641 0.41 +0.8 665,583 - HP15_641 0.42 +2.3 665,583 - HP15_641 0.42 -0.2 665,608 - HP15_641 0.44 +0.5 665,625 + HP15_641 0.46 +0.6 665,763 - HP15_641 0.57 +1.0 665,889 + HP15_641 0.66 +0.1 665,946 - HP15_641 0.71 +0.5 665,981 + HP15_641 0.74 -0.4 666,032 + HP15_641 0.78 +0.6 666,065 - HP15_641 0.80 +0.0 666,111 - HP15_641 0.84 -0.4 666,171 + HP15_641 0.88 +0.1 666,179 - HP15_641 0.89 -0.2 666,222 + +0.3 666,223 + +0.1 666,223 - +0.3 666,266 - +0.5 666,296 + -0.1 666,296 + +0.4 666,304 - -0.2 666,361 - HP15_642 0.16 -0.7 666,385 - HP15_642 0.25 -0.3 666,522 + HP15_642 0.78 -1.1 666,739 + HP15_643 0.18 +1.5 666,914 + HP15_643 0.58 -0.5 666,947 - HP15_643 0.66 -1.0 666,968 - HP15_643 0.71 -0.7 667,008 + HP15_643 0.80 -0.2 667,034 + HP15_643 0.86 +0.6 667,057 - -1.0 667,143 + +0.1 667,143 + +0.3 667,151 - -0.2 667,151 - -1.1 667,220 + +0.0 667,259 - +1.0 667,321 + +0.8 667,371 - -0.8 667,381 - +0.4
Or see this region's nucleotide sequence