Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_635 and HP15_636 are separated by 160 nucleotides HP15_636 and HP15_637 are separated by 191 nucleotides
HP15_635: HP15_635 - 3-oxoacyl-(acyl carrier protein) synthase I, at 656,668 to 657,852
_635
HP15_636: HP15_636 - GTP-binding protein, ribosome biogenesis, YlqF, at 658,013 to 658,951
_636
HP15_637: HP15_637 - conserved hypothetical protein, secreted, at 659,143 to 659,658
_637
Position (kb) 658
659 Strain fitness (log2 ratio) -1
0
1 at 657.019 kb on - strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.039 kb on + strand, within HP15_635 at 657.047 kb on - strand, within HP15_635 at 657.052 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.089 kb on - strand, within HP15_635 at 657.345 kb on - strand, within HP15_635 at 657.350 kb on + strand, within HP15_635 at 657.454 kb on + strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.513 kb on - strand, within HP15_635 at 657.682 kb on - strand, within HP15_635 at 658.019 kb on - strand at 658.126 kb on + strand, within HP15_636 at 658.134 kb on - strand, within HP15_636 at 658.134 kb on - strand, within HP15_636 at 659.231 kb on + strand, within HP15_637 at 659.231 kb on + strand, within HP15_637 at 659.471 kb on - strand, within HP15_637 at 659.524 kb on + strand, within HP15_637 at 659.551 kb on - strand, within HP15_637 at 659.661 kb on - strand at 659.692 kb on - strand at 659.757 kb on - strand at 659.765 kb on - strand at 659.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 657,019 - HP15_635 0.30 -0.2 657,039 + HP15_635 0.31 -0.5 657,039 + HP15_635 0.31 +0.7 657,047 - HP15_635 0.32 +0.6 657,052 - HP15_635 0.32 +0.5 657,089 - HP15_635 0.36 -0.7 657,089 - HP15_635 0.36 -1.5 657,345 - HP15_635 0.57 -0.0 657,350 + HP15_635 0.58 -1.2 657,454 + HP15_635 0.66 -0.5 657,513 - HP15_635 0.71 -0.0 657,513 - HP15_635 0.71 +1.7 657,682 - HP15_635 0.86 +0.0 658,019 - +0.7 658,126 + HP15_636 0.12 -0.3 658,134 - HP15_636 0.13 -1.3 658,134 - HP15_636 0.13 -0.5 659,231 + HP15_637 0.17 +1.0 659,231 + HP15_637 0.17 -0.0 659,471 - HP15_637 0.64 -1.2 659,524 + HP15_637 0.74 -0.5 659,551 - HP15_637 0.79 -0.0 659,661 - +0.4 659,692 - -0.5 659,757 - -0.5 659,765 - +1.1 659,845 + +0.7
Or see this region's nucleotide sequence