Strain Fitness in Marinobacter adhaerens HP15 around HP15_3983

Experiment: D-Alanine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3982 and HP15_3983 are separated by 112 nucleotidesHP15_3983 and HP15_3984 are separated by 100 nucleotides HP15_3982: HP15_3982 - sensor signal transduction histidine kinase-like protein, at 4,213,692 to 4,214,963 _3982 HP15_3983: HP15_3983 - hypothetical protein, at 4,215,076 to 4,215,207 _3983 HP15_3984: HP15_3984 - TonB-dependent copper receptor, at 4,215,308 to 4,217,110 _3984 Position (kb) 4215 4216Strain fitness (log2 ratio) -1 0 1 2at 4214.083 kb on + strand, within HP15_3982at 4214.093 kb on + strand, within HP15_3982at 4214.124 kb on + strand, within HP15_3982at 4214.127 kb on - strand, within HP15_3982at 4214.132 kb on - strand, within HP15_3982at 4214.155 kb on + strand, within HP15_3982at 4214.155 kb on + strand, within HP15_3982at 4214.163 kb on - strand, within HP15_3982at 4214.163 kb on - strand, within HP15_3982at 4214.226 kb on - strand, within HP15_3982at 4214.301 kb on + strand, within HP15_3982at 4214.301 kb on + strand, within HP15_3982at 4214.309 kb on - strand, within HP15_3982at 4214.345 kb on + strand, within HP15_3982at 4214.353 kb on - strand, within HP15_3982at 4214.496 kb on + strand, within HP15_3982at 4214.525 kb on + strand, within HP15_3982at 4214.533 kb on - strand, within HP15_3982at 4214.533 kb on - strand, within HP15_3982at 4214.533 kb on - strand, within HP15_3982at 4214.552 kb on + strand, within HP15_3982at 4214.591 kb on + strand, within HP15_3982at 4214.599 kb on - strand, within HP15_3982at 4214.640 kb on - strand, within HP15_3982at 4214.692 kb on - strand, within HP15_3982at 4214.729 kb on + strand, within HP15_3982at 4214.770 kb on - strand, within HP15_3982at 4214.770 kb on - strand, within HP15_3982at 4214.785 kb on - strand, within HP15_3982at 4214.834 kb on + strand, within HP15_3982at 4215.015 kb on - strandat 4215.074 kb on + strandat 4215.089 kb on + strandat 4215.089 kb on + strandat 4215.176 kb on + strand, within HP15_3983at 4215.184 kb on + strand, within HP15_3983at 4215.228 kb on + strandat 4215.228 kb on + strandat 4215.228 kb on + strandat 4215.229 kb on - strandat 4215.236 kb on - strandat 4215.236 kb on - strandat 4215.236 kb on - strandat 4215.236 kb on - strandat 4215.273 kb on - strandat 4215.366 kb on - strandat 4215.469 kb on - strandat 4215.519 kb on - strand, within HP15_3984at 4215.528 kb on - strand, within HP15_3984at 4215.612 kb on - strand, within HP15_3984at 4215.644 kb on - strand, within HP15_3984at 4215.676 kb on + strand, within HP15_3984at 4215.713 kb on + strand, within HP15_3984at 4215.905 kb on - strand, within HP15_3984at 4215.919 kb on + strand, within HP15_3984at 4215.919 kb on + strand, within HP15_3984at 4215.923 kb on - strand, within HP15_3984at 4216.029 kb on - strand, within HP15_3984at 4216.036 kb on + strand, within HP15_3984at 4216.109 kb on + strand, within HP15_3984at 4216.148 kb on + strand, within HP15_3984at 4216.166 kb on - strand, within HP15_3984

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine
remove
4,214,083 + HP15_3982 0.31 -0.2
4,214,093 + HP15_3982 0.32 -0.8
4,214,124 + HP15_3982 0.34 +0.0
4,214,127 - HP15_3982 0.34 +0.2
4,214,132 - HP15_3982 0.35 +0.1
4,214,155 + HP15_3982 0.36 -0.2
4,214,155 + HP15_3982 0.36 -0.1
4,214,163 - HP15_3982 0.37 +1.8
4,214,163 - HP15_3982 0.37 +0.3
4,214,226 - HP15_3982 0.42 -0.1
4,214,301 + HP15_3982 0.48 +0.9
4,214,301 + HP15_3982 0.48 -0.2
4,214,309 - HP15_3982 0.49 +0.8
4,214,345 + HP15_3982 0.51 -0.6
4,214,353 - HP15_3982 0.52 +0.4
4,214,496 + HP15_3982 0.63 -1.0
4,214,525 + HP15_3982 0.65 -0.3
4,214,533 - HP15_3982 0.66 +0.7
4,214,533 - HP15_3982 0.66 -1.2
4,214,533 - HP15_3982 0.66 +0.2
4,214,552 + HP15_3982 0.68 +0.9
4,214,591 + HP15_3982 0.71 -0.7
4,214,599 - HP15_3982 0.71 -0.2
4,214,640 - HP15_3982 0.75 +0.6
4,214,692 - HP15_3982 0.79 +0.2
4,214,729 + HP15_3982 0.82 +0.2
4,214,770 - HP15_3982 0.85 -0.3
4,214,770 - HP15_3982 0.85 -0.7
4,214,785 - HP15_3982 0.86 +1.6
4,214,834 + HP15_3982 0.90 -0.2
4,215,015 - -1.2
4,215,074 + +0.8
4,215,089 + +1.5
4,215,089 + -0.2
4,215,176 + HP15_3983 0.76 -1.0
4,215,184 + HP15_3983 0.82 -0.0
4,215,228 + -0.1
4,215,228 + -0.5
4,215,228 + +0.5
4,215,229 - -0.5
4,215,236 - +0.4
4,215,236 - +0.3
4,215,236 - +0.2
4,215,236 - +0.9
4,215,273 - +0.3
4,215,366 - -0.2
4,215,469 - -0.2
4,215,519 - HP15_3984 0.12 +1.9
4,215,528 - HP15_3984 0.12 +1.6
4,215,612 - HP15_3984 0.17 -0.3
4,215,644 - HP15_3984 0.19 +0.1
4,215,676 + HP15_3984 0.20 +0.0
4,215,713 + HP15_3984 0.22 -0.1
4,215,905 - HP15_3984 0.33 +0.0
4,215,919 + HP15_3984 0.34 +0.6
4,215,919 + HP15_3984 0.34 +0.1
4,215,923 - HP15_3984 0.34 +0.1
4,216,029 - HP15_3984 0.40 -0.7
4,216,036 + HP15_3984 0.40 +0.0
4,216,109 + HP15_3984 0.44 -0.5
4,216,148 + HP15_3984 0.47 +0.8
4,216,166 - HP15_3984 0.48 +0.0

Or see this region's nucleotide sequence