Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3982 and HP15_3983 are separated by 112 nucleotides HP15_3983 and HP15_3984 are separated by 100 nucleotides
HP15_3982: HP15_3982 - sensor signal transduction histidine kinase-like protein, at 4,213,692 to 4,214,963
_3982
HP15_3983: HP15_3983 - hypothetical protein, at 4,215,076 to 4,215,207
_3983
HP15_3984: HP15_3984 - TonB-dependent copper receptor, at 4,215,308 to 4,217,110
_3984
Position (kb)
4215
4216 Strain fitness (log2 ratio)
-1
0
1
2 at 4214.083 kb on + strand, within HP15_3982 at 4214.093 kb on + strand, within HP15_3982 at 4214.124 kb on + strand, within HP15_3982 at 4214.127 kb on - strand, within HP15_3982 at 4214.132 kb on - strand, within HP15_3982 at 4214.155 kb on + strand, within HP15_3982 at 4214.155 kb on + strand, within HP15_3982 at 4214.163 kb on - strand, within HP15_3982 at 4214.163 kb on - strand, within HP15_3982 at 4214.226 kb on - strand, within HP15_3982 at 4214.301 kb on + strand, within HP15_3982 at 4214.301 kb on + strand, within HP15_3982 at 4214.309 kb on - strand, within HP15_3982 at 4214.345 kb on + strand, within HP15_3982 at 4214.353 kb on - strand, within HP15_3982 at 4214.496 kb on + strand, within HP15_3982 at 4214.525 kb on + strand, within HP15_3982 at 4214.533 kb on - strand, within HP15_3982 at 4214.533 kb on - strand, within HP15_3982 at 4214.533 kb on - strand, within HP15_3982 at 4214.552 kb on + strand, within HP15_3982 at 4214.591 kb on + strand, within HP15_3982 at 4214.599 kb on - strand, within HP15_3982 at 4214.640 kb on - strand, within HP15_3982 at 4214.692 kb on - strand, within HP15_3982 at 4214.729 kb on + strand, within HP15_3982 at 4214.770 kb on - strand, within HP15_3982 at 4214.770 kb on - strand, within HP15_3982 at 4214.785 kb on - strand, within HP15_3982 at 4214.834 kb on + strand, within HP15_3982 at 4215.015 kb on - strand at 4215.074 kb on + strand at 4215.089 kb on + strand at 4215.089 kb on + strand at 4215.176 kb on + strand, within HP15_3983 at 4215.184 kb on + strand, within HP15_3983 at 4215.228 kb on + strand at 4215.228 kb on + strand at 4215.228 kb on + strand at 4215.229 kb on - strand at 4215.236 kb on - strand at 4215.236 kb on - strand at 4215.236 kb on - strand at 4215.236 kb on - strand at 4215.273 kb on - strand at 4215.366 kb on - strand at 4215.469 kb on - strand at 4215.519 kb on - strand, within HP15_3984 at 4215.528 kb on - strand, within HP15_3984 at 4215.612 kb on - strand, within HP15_3984 at 4215.644 kb on - strand, within HP15_3984 at 4215.676 kb on + strand, within HP15_3984 at 4215.713 kb on + strand, within HP15_3984 at 4215.905 kb on - strand, within HP15_3984 at 4215.919 kb on + strand, within HP15_3984 at 4215.919 kb on + strand, within HP15_3984 at 4215.923 kb on - strand, within HP15_3984 at 4216.029 kb on - strand, within HP15_3984 at 4216.036 kb on + strand, within HP15_3984 at 4216.109 kb on + strand, within HP15_3984 at 4216.148 kb on + strand, within HP15_3984 at 4216.166 kb on - strand, within HP15_3984
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 4,214,083 + HP15_3982 0.31 -0.2 4,214,093 + HP15_3982 0.32 -0.8 4,214,124 + HP15_3982 0.34 +0.0 4,214,127 - HP15_3982 0.34 +0.2 4,214,132 - HP15_3982 0.35 +0.1 4,214,155 + HP15_3982 0.36 -0.2 4,214,155 + HP15_3982 0.36 -0.1 4,214,163 - HP15_3982 0.37 +1.8 4,214,163 - HP15_3982 0.37 +0.3 4,214,226 - HP15_3982 0.42 -0.1 4,214,301 + HP15_3982 0.48 +0.9 4,214,301 + HP15_3982 0.48 -0.2 4,214,309 - HP15_3982 0.49 +0.8 4,214,345 + HP15_3982 0.51 -0.6 4,214,353 - HP15_3982 0.52 +0.4 4,214,496 + HP15_3982 0.63 -1.0 4,214,525 + HP15_3982 0.65 -0.3 4,214,533 - HP15_3982 0.66 +0.7 4,214,533 - HP15_3982 0.66 -1.2 4,214,533 - HP15_3982 0.66 +0.2 4,214,552 + HP15_3982 0.68 +0.9 4,214,591 + HP15_3982 0.71 -0.7 4,214,599 - HP15_3982 0.71 -0.2 4,214,640 - HP15_3982 0.75 +0.6 4,214,692 - HP15_3982 0.79 +0.2 4,214,729 + HP15_3982 0.82 +0.2 4,214,770 - HP15_3982 0.85 -0.3 4,214,770 - HP15_3982 0.85 -0.7 4,214,785 - HP15_3982 0.86 +1.6 4,214,834 + HP15_3982 0.90 -0.2 4,215,015 - -1.2 4,215,074 + +0.8 4,215,089 + +1.5 4,215,089 + -0.2 4,215,176 + HP15_3983 0.76 -1.0 4,215,184 + HP15_3983 0.82 -0.0 4,215,228 + -0.1 4,215,228 + -0.5 4,215,228 + +0.5 4,215,229 - -0.5 4,215,236 - +0.4 4,215,236 - +0.3 4,215,236 - +0.2 4,215,236 - +0.9 4,215,273 - +0.3 4,215,366 - -0.2 4,215,469 - -0.2 4,215,519 - HP15_3984 0.12 +1.9 4,215,528 - HP15_3984 0.12 +1.6 4,215,612 - HP15_3984 0.17 -0.3 4,215,644 - HP15_3984 0.19 +0.1 4,215,676 + HP15_3984 0.20 +0.0 4,215,713 + HP15_3984 0.22 -0.1 4,215,905 - HP15_3984 0.33 +0.0 4,215,919 + HP15_3984 0.34 +0.6 4,215,919 + HP15_3984 0.34 +0.1 4,215,923 - HP15_3984 0.34 +0.1 4,216,029 - HP15_3984 0.40 -0.7 4,216,036 + HP15_3984 0.40 +0.0 4,216,109 + HP15_3984 0.44 -0.5 4,216,148 + HP15_3984 0.47 +0.8 4,216,166 - HP15_3984 0.48 +0.0
Or see this region's nucleotide sequence