Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01610 and PGA1_262p01620 are separated by 27 nucleotides PGA1_262p01620 and PGA1_262p01630 are separated by 68 nucleotides PGA1_262p01630 and PGA1_262p01640 are separated by 194 nucleotides PGA1_262p01640 and PGA1_262p01650 are separated by 122 nucleotides
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
PGA1_262p01620: PGA1_262p01620 - Uncharacterized protein conserved in bacteria, at 178,907 to 179,407
_262p01620
PGA1_262p01630: PGA1_262p01630 - hypothetical protein, at 179,476 to 179,721
_262p01630
PGA1_262p01640: PGA1_262p01640 - hypothetical protein, at 179,916 to 180,152
_262p01640
PGA1_262p01650: PGA1_262p01650 - putative insertion sequence ATP binding protein, at 180,275 to 181,006
_262p01650
Position (kb) 179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 178.606 kb on + strand, within PGA1_262p01610 at 178.664 kb on - strand, within PGA1_262p01610 at 178.715 kb on + strand, within PGA1_262p01610 at 178.755 kb on + strand at 178.755 kb on + strand at 178.758 kb on - strand at 178.763 kb on - strand at 178.881 kb on + strand at 178.894 kb on - strand at 178.947 kb on - strand at 179.050 kb on - strand, within PGA1_262p01620 at 179.253 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.461 kb on + strand at 179.469 kb on - strand at 179.509 kb on + strand, within PGA1_262p01630 at 179.570 kb on + strand, within PGA1_262p01630 at 179.574 kb on - strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.713 kb on + strand at 179.750 kb on - strand at 179.750 kb on - strand at 179.795 kb on + strand at 179.796 kb on + strand at 179.798 kb on - strand at 179.806 kb on + strand at 179.836 kb on + strand at 179.836 kb on - strand at 179.844 kb on - strand at 179.892 kb on + strand at 179.893 kb on + strand at 179.928 kb on + strand at 180.010 kb on - strand, within PGA1_262p01640 at 180.399 kb on + strand, within PGA1_262p01650
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 178,606 + PGA1_262p01610 0.78 -2.5 178,664 - PGA1_262p01610 0.83 -3.0 178,715 + PGA1_262p01610 0.87 -0.6 178,755 + +0.0 178,755 + +0.5 178,758 - -1.4 178,763 - -2.1 178,881 + -0.5 178,894 - +0.0 178,947 - -0.8 179,050 - PGA1_262p01620 0.29 +0.0 179,253 + PGA1_262p01620 0.69 +1.0 179,310 + PGA1_262p01620 0.80 +1.1 179,310 + PGA1_262p01620 0.80 -1.7 179,310 + PGA1_262p01620 0.80 -1.2 179,461 + +1.0 179,469 - +0.8 179,509 + PGA1_262p01630 0.13 -0.4 179,570 + PGA1_262p01630 0.38 -1.0 179,574 - PGA1_262p01630 0.40 +0.0 179,651 + PGA1_262p01630 0.71 +0.9 179,651 + PGA1_262p01630 0.71 +2.9 179,713 + +1.2 179,750 - -0.5 179,750 - -0.9 179,795 + -1.3 179,796 + +0.6 179,798 - -0.5 179,806 + -0.3 179,836 + +1.3 179,836 - -0.5 179,844 - -0.8 179,892 + -3.0 179,893 + +0.4 179,928 + +2.3 180,010 - PGA1_262p01640 0.40 +0.0 180,399 + PGA1_262p01650 0.17 +1.6
Or see this region's nucleotide sequence