Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00290

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00280 and PGA1_262p00290 are separated by 200 nucleotidesPGA1_262p00290 and PGA1_262p00300 are separated by 148 nucleotides PGA1_262p00280: PGA1_262p00280 - putative proline racemase, at 31,428 to 32,453 _262p00280 PGA1_262p00290: PGA1_262p00290 - putative transcriptional regulator, at 32,654 to 33,265 _262p00290 PGA1_262p00300: PGA1_262p00300 - ABC transporter, extracellular solute-binding protein, at 33,414 to 35,000 _262p00300 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 31.712 kb on + strand, within PGA1_262p00280at 31.755 kb on - strand, within PGA1_262p00280at 31.808 kb on - strand, within PGA1_262p00280at 31.896 kb on + strand, within PGA1_262p00280at 31.918 kb on + strand, within PGA1_262p00280at 31.926 kb on - strand, within PGA1_262p00280at 32.259 kb on - strand, within PGA1_262p00280at 32.262 kb on + strand, within PGA1_262p00280at 32.316 kb on + strand, within PGA1_262p00280at 32.316 kb on + strand, within PGA1_262p00280at 32.325 kb on - strand, within PGA1_262p00280at 32.355 kb on - strandat 32.396 kb on + strandat 32.460 kb on + strandat 32.613 kb on - strandat 32.623 kb on - strandat 32.623 kb on - strandat 32.623 kb on - strandat 32.667 kb on - strandat 32.712 kb on + strandat 32.712 kb on + strandat 32.720 kb on + strand, within PGA1_262p00290at 32.720 kb on - strand, within PGA1_262p00290at 32.720 kb on - strand, within PGA1_262p00290at 32.780 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.049 kb on - strand, within PGA1_262p00290at 33.122 kb on - strand, within PGA1_262p00290at 33.151 kb on + strand, within PGA1_262p00290at 33.159 kb on - strand, within PGA1_262p00290at 33.159 kb on - strand, within PGA1_262p00290at 33.172 kb on - strand, within PGA1_262p00290at 33.174 kb on + strand, within PGA1_262p00290at 33.174 kb on + strand, within PGA1_262p00290at 33.237 kb on - strandat 33.259 kb on + strandat 33.278 kb on + strandat 33.286 kb on - strandat 33.305 kb on + strandat 33.399 kb on + strandat 33.456 kb on + strandat 33.464 kb on - strandat 33.464 kb on - strandat 33.490 kb on - strandat 33.646 kb on + strand, within PGA1_262p00300at 33.955 kb on - strand, within PGA1_262p00300at 34.198 kb on - strand, within PGA1_262p00300at 34.258 kb on - strand, within PGA1_262p00300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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31,712 + PGA1_262p00280 0.28 -0.9
31,755 - PGA1_262p00280 0.32 +0.5
31,808 - PGA1_262p00280 0.37 +0.0
31,896 + PGA1_262p00280 0.46 +2.4
31,918 + PGA1_262p00280 0.48 -0.8
31,926 - PGA1_262p00280 0.49 +0.5
32,259 - PGA1_262p00280 0.81 +1.0
32,262 + PGA1_262p00280 0.81 +0.3
32,316 + PGA1_262p00280 0.87 +1.0
32,316 + PGA1_262p00280 0.87 -1.4
32,325 - PGA1_262p00280 0.87 -0.4
32,355 - +0.0
32,396 + -0.2
32,460 + +0.4
32,613 - -1.1
32,623 - -0.2
32,623 - -1.3
32,623 - -0.1
32,667 - -2.0
32,712 + +1.5
32,712 + -1.0
32,720 + PGA1_262p00290 0.11 +0.1
32,720 - PGA1_262p00290 0.11 +1.1
32,720 - PGA1_262p00290 0.11 -0.5
32,780 + PGA1_262p00290 0.21 +1.0
33,016 + PGA1_262p00290 0.59 +0.3
33,016 + PGA1_262p00290 0.59 -0.3
33,016 + PGA1_262p00290 0.59 -0.7
33,016 + PGA1_262p00290 0.59 +0.5
33,049 - PGA1_262p00290 0.65 +0.5
33,122 - PGA1_262p00290 0.76 +1.8
33,151 + PGA1_262p00290 0.81 -0.3
33,159 - PGA1_262p00290 0.83 -0.7
33,159 - PGA1_262p00290 0.83 +0.5
33,172 - PGA1_262p00290 0.85 +2.2
33,174 + PGA1_262p00290 0.85 +0.5
33,174 + PGA1_262p00290 0.85 +1.8
33,237 - +0.3
33,259 + +0.0
33,278 + +1.6
33,286 - -0.4
33,305 + +0.3
33,399 + +0.8
33,456 + -0.3
33,464 - -1.3
33,464 - -0.4
33,490 - +1.0
33,646 + PGA1_262p00300 0.15 -1.3
33,955 - PGA1_262p00300 0.34 +0.2
34,198 - PGA1_262p00300 0.49 +1.0
34,258 - PGA1_262p00300 0.53 +0.4

Or see this region's nucleotide sequence