Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3507 and HP15_3508 are separated by 57 nucleotides HP15_3508 and HP15_3509 are separated by 7 nucleotides HP15_3509 and HP15_3510 are separated by 19 nucleotides HP15_3510 and HP15_3511 are separated by 26 nucleotides
HP15_3507: HP15_3507 - aspartate carbamoyltransferase, at 3,691,373 to 3,692,356
_3507
HP15_3508: HP15_3508 - bifunctional protein PyrR, at 3,692,414 to 3,692,923
_3508
HP15_3509: HP15_3509 - Holliday junction resolvase, at 3,692,931 to 3,693,326
_3509
HP15_3510: HP15_3510 - transcriptional regulator, at 3,693,346 to 3,693,882
_3510
HP15_3511: HP15_3511 - TonB family protein, at 3,693,909 to 3,694,775
_3511
Position (kb)
3692
3693 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3691.838 kb on + strand, within HP15_3507 at 3692.178 kb on - strand, within HP15_3507 at 3692.254 kb on + strand, within HP15_3507 at 3692.358 kb on - strand at 3692.449 kb on + strand at 3692.457 kb on - strand at 3692.568 kb on - strand, within HP15_3508 at 3692.568 kb on - strand, within HP15_3508 at 3692.635 kb on - strand, within HP15_3508 at 3692.683 kb on - strand, within HP15_3508 at 3692.683 kb on - strand, within HP15_3508 at 3692.739 kb on + strand, within HP15_3508 at 3692.778 kb on + strand, within HP15_3508 at 3692.825 kb on + strand, within HP15_3508 at 3692.838 kb on - strand, within HP15_3508 at 3692.916 kb on + strand at 3693.439 kb on - strand, within HP15_3510 at 3693.595 kb on + strand, within HP15_3510 at 3693.595 kb on - strand, within HP15_3510 at 3693.634 kb on + strand, within HP15_3510 at 3693.662 kb on - strand, within HP15_3510 at 3693.781 kb on + strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 3,691,838 + HP15_3507 0.47 -1.0 3,692,178 - HP15_3507 0.82 -0.7 3,692,254 + HP15_3507 0.90 -0.2 3,692,358 - -3.2 3,692,449 + +0.5 3,692,457 - -0.2 3,692,568 - HP15_3508 0.30 -0.8 3,692,568 - HP15_3508 0.30 -1.9 3,692,635 - HP15_3508 0.43 -0.5 3,692,683 - HP15_3508 0.53 -0.0 3,692,683 - HP15_3508 0.53 -0.7 3,692,739 + HP15_3508 0.64 +0.5 3,692,778 + HP15_3508 0.71 -0.9 3,692,825 + HP15_3508 0.81 -0.1 3,692,838 - HP15_3508 0.83 +0.6 3,692,916 + +0.4 3,693,439 - HP15_3510 0.17 +1.2 3,693,595 + HP15_3510 0.46 -0.6 3,693,595 - HP15_3510 0.46 +0.6 3,693,634 + HP15_3510 0.54 +0.3 3,693,662 - HP15_3510 0.59 -2.1 3,693,781 + HP15_3510 0.81 -0.0 3,693,789 - HP15_3510 0.82 -0.5 3,693,789 - HP15_3510 0.82 +1.2 3,693,789 - HP15_3510 0.82 -1.2 3,693,789 - HP15_3510 0.82 -0.1
Or see this region's nucleotide sequence