Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_340 and HP15_341 are separated by 136 nucleotides HP15_341 and HP15_342 are separated by 31 nucleotides HP15_342 and HP15_343 are separated by 10 nucleotides
HP15_340: HP15_340 - lipoprotein, at 336,562 to 337,497
_340
HP15_341: HP15_341 - hypothetical protein, at 337,634 to 337,741
_341
HP15_342: HP15_342 - RNA polymerase sigma factor SigE, at 337,773 to 338,309
_342
HP15_343: HP15_343 - transmembrane anti-sigma factor, at 338,320 to 339,021
_343
Position (kb) 337
338 Strain fitness (log2 ratio) -1
0
1
2 at 336.727 kb on + strand, within HP15_340 at 336.732 kb on + strand, within HP15_340 at 336.801 kb on + strand, within HP15_340 at 336.809 kb on - strand, within HP15_340 at 336.810 kb on - strand, within HP15_340 at 336.817 kb on + strand, within HP15_340 at 336.848 kb on + strand, within HP15_340 at 336.933 kb on + strand, within HP15_340 at 336.986 kb on + strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.028 kb on - strand, within HP15_340 at 337.063 kb on - strand, within HP15_340 at 337.242 kb on - strand, within HP15_340 at 337.277 kb on - strand, within HP15_340 at 337.351 kb on + strand, within HP15_340 at 337.351 kb on + strand, within HP15_340 at 337.402 kb on - strand, within HP15_340 at 337.436 kb on + strand at 337.517 kb on + strand at 337.670 kb on - strand, within HP15_341 at 337.692 kb on + strand, within HP15_341 at 337.768 kb on + strand at 337.780 kb on - strand at 337.887 kb on - strand, within HP15_342 at 338.050 kb on + strand, within HP15_342 at 338.190 kb on + strand, within HP15_342 at 338.228 kb on + strand, within HP15_342 at 338.303 kb on + strand at 338.363 kb on + strand at 338.435 kb on + strand, within HP15_343 at 338.487 kb on + strand, within HP15_343 at 338.513 kb on + strand, within HP15_343 at 338.518 kb on + strand, within HP15_343 at 338.572 kb on + strand, within HP15_343 at 338.597 kb on + strand, within HP15_343 at 338.636 kb on - strand, within HP15_343
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 336,727 + HP15_340 0.18 -0.1 336,732 + HP15_340 0.18 +1.1 336,801 + HP15_340 0.26 -0.3 336,809 - HP15_340 0.26 +0.2 336,810 - HP15_340 0.26 -0.3 336,817 + HP15_340 0.27 +0.9 336,848 + HP15_340 0.31 +0.7 336,933 + HP15_340 0.40 +0.3 336,986 + HP15_340 0.45 -0.8 336,994 - HP15_340 0.46 +0.1 336,994 - HP15_340 0.46 -1.2 336,994 - HP15_340 0.46 +0.6 337,020 + HP15_340 0.49 +0.8 337,020 + HP15_340 0.49 +1.0 337,020 + HP15_340 0.49 -0.4 337,020 + HP15_340 0.49 +1.8 337,028 - HP15_340 0.50 -0.2 337,063 - HP15_340 0.54 +0.4 337,242 - HP15_340 0.73 -0.9 337,277 - HP15_340 0.76 +0.1 337,351 + HP15_340 0.84 -0.2 337,351 + HP15_340 0.84 -0.1 337,402 - HP15_340 0.90 +0.0 337,436 + -0.2 337,517 + -0.6 337,670 - HP15_341 0.33 -1.5 337,692 + HP15_341 0.54 -0.8 337,768 + -0.3 337,780 - +0.1 337,887 - HP15_342 0.21 +1.5 338,050 + HP15_342 0.52 -0.2 338,190 + HP15_342 0.78 +0.8 338,228 + HP15_342 0.85 +0.2 338,303 + -0.0 338,363 + -1.2 338,435 + HP15_343 0.16 -1.6 338,487 + HP15_343 0.24 -0.3 338,513 + HP15_343 0.27 +0.7 338,518 + HP15_343 0.28 -1.1 338,572 + HP15_343 0.36 -0.8 338,597 + HP15_343 0.39 -1.3 338,636 - HP15_343 0.45 +0.3
Or see this region's nucleotide sequence