Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29400

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29390 and PGA1_c29400 are separated by 271 nucleotidesPGA1_c29400 and PGA1_c29410 are separated by 26 nucleotides PGA1_c29390: PGA1_c29390 - penicillin-binding protein, 1A family, at 3,071,824 to 3,074,100 _c29390 PGA1_c29400: PGA1_c29400 - nitrogen regulatory protein P-II, at 3,074,372 to 3,074,710 _c29400 PGA1_c29410: PGA1_c29410 - ammonium transporter, at 3,074,737 to 3,076,077 _c29410 Position (kb) 3074 3075Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3073.943 kb on + strandat 3073.951 kb on - strandat 3073.953 kb on + strandat 3073.953 kb on - strandat 3073.961 kb on - strandat 3074.000 kb on + strandat 3074.029 kb on - strandat 3074.029 kb on - strandat 3074.029 kb on - strandat 3074.144 kb on + strandat 3074.149 kb on + strandat 3074.152 kb on - strandat 3074.162 kb on - strandat 3074.269 kb on - strandat 3074.323 kb on - strandat 3074.325 kb on + strandat 3074.391 kb on + strandat 3074.399 kb on - strandat 3074.555 kb on + strand, within PGA1_c29400at 3074.598 kb on + strand, within PGA1_c29400at 3074.606 kb on - strand, within PGA1_c29400at 3074.610 kb on - strand, within PGA1_c29400at 3074.636 kb on + strand, within PGA1_c29400at 3074.705 kb on + strandat 3074.707 kb on + strandat 3074.707 kb on + strandat 3074.707 kb on + strandat 3074.713 kb on - strandat 3074.715 kb on - strandat 3074.752 kb on - strandat 3074.782 kb on - strandat 3074.792 kb on - strandat 3074.843 kb on + strandat 3074.859 kb on + strandat 3074.872 kb on - strand, within PGA1_c29410at 3074.925 kb on + strand, within PGA1_c29410at 3074.933 kb on - strand, within PGA1_c29410at 3074.936 kb on + strand, within PGA1_c29410at 3074.943 kb on - strand, within PGA1_c29410at 3074.943 kb on - strand, within PGA1_c29410at 3074.944 kb on - strand, within PGA1_c29410at 3074.988 kb on + strand, within PGA1_c29410at 3074.988 kb on + strand, within PGA1_c29410at 3074.988 kb on + strand, within PGA1_c29410at 3074.996 kb on - strand, within PGA1_c29410at 3074.996 kb on - strand, within PGA1_c29410at 3075.023 kb on + strand, within PGA1_c29410at 3075.116 kb on + strand, within PGA1_c29410at 3075.116 kb on + strand, within PGA1_c29410at 3075.116 kb on + strand, within PGA1_c29410at 3075.116 kb on + strand, within PGA1_c29410at 3075.116 kb on + strand, within PGA1_c29410at 3075.116 kb on + strand, within PGA1_c29410at 3075.116 kb on + strand, within PGA1_c29410at 3075.124 kb on - strand, within PGA1_c29410at 3075.124 kb on - strand, within PGA1_c29410at 3075.124 kb on - strand, within PGA1_c29410at 3075.124 kb on - strand, within PGA1_c29410at 3075.124 kb on - strand, within PGA1_c29410at 3075.124 kb on - strand, within PGA1_c29410at 3075.140 kb on + strand, within PGA1_c29410at 3075.173 kb on + strand, within PGA1_c29410at 3075.205 kb on - strand, within PGA1_c29410at 3075.205 kb on - strand, within PGA1_c29410at 3075.226 kb on + strand, within PGA1_c29410at 3075.228 kb on + strand, within PGA1_c29410at 3075.228 kb on + strand, within PGA1_c29410at 3075.242 kb on - strand, within PGA1_c29410at 3075.252 kb on - strand, within PGA1_c29410at 3075.276 kb on + strand, within PGA1_c29410at 3075.276 kb on + strand, within PGA1_c29410at 3075.284 kb on - strand, within PGA1_c29410at 3075.286 kb on + strand, within PGA1_c29410at 3075.375 kb on + strand, within PGA1_c29410at 3075.375 kb on + strand, within PGA1_c29410at 3075.388 kb on - strand, within PGA1_c29410at 3075.557 kb on - strand, within PGA1_c29410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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3,073,943 + -1.7
3,073,951 - -1.9
3,073,953 + -1.4
3,073,953 - -2.6
3,073,961 - -2.6
3,074,000 + -1.1
3,074,029 - -0.7
3,074,029 - -1.7
3,074,029 - -0.1
3,074,144 + -0.4
3,074,149 + -1.8
3,074,152 - -1.6
3,074,162 - -1.2
3,074,269 - -0.6
3,074,323 - +0.4
3,074,325 + +0.2
3,074,391 + -1.4
3,074,399 - -0.1
3,074,555 + PGA1_c29400 0.54 +1.0
3,074,598 + PGA1_c29400 0.67 +0.0
3,074,606 - PGA1_c29400 0.69 +1.4
3,074,610 - PGA1_c29400 0.70 +0.2
3,074,636 + PGA1_c29400 0.78 +0.8
3,074,705 + +1.0
3,074,707 + -0.8
3,074,707 + +1.1
3,074,707 + -0.5
3,074,713 - +0.3
3,074,715 - -1.1
3,074,752 - -0.3
3,074,782 - -0.6
3,074,792 - -0.2
3,074,843 + -1.0
3,074,859 + -0.8
3,074,872 - PGA1_c29410 0.10 +0.6
3,074,925 + PGA1_c29410 0.14 -0.9
3,074,933 - PGA1_c29410 0.15 +0.3
3,074,936 + PGA1_c29410 0.15 -0.0
3,074,943 - PGA1_c29410 0.15 +1.2
3,074,943 - PGA1_c29410 0.15 +0.6
3,074,944 - PGA1_c29410 0.15 -0.1
3,074,988 + PGA1_c29410 0.19 +0.3
3,074,988 + PGA1_c29410 0.19 +1.2
3,074,988 + PGA1_c29410 0.19 +1.5
3,074,996 - PGA1_c29410 0.19 -0.8
3,074,996 - PGA1_c29410 0.19 -1.8
3,075,023 + PGA1_c29410 0.21 +0.3
3,075,116 + PGA1_c29410 0.28 -2.8
3,075,116 + PGA1_c29410 0.28 +0.4
3,075,116 + PGA1_c29410 0.28 -1.4
3,075,116 + PGA1_c29410 0.28 -1.1
3,075,116 + PGA1_c29410 0.28 +0.2
3,075,116 + PGA1_c29410 0.28 +0.7
3,075,116 + PGA1_c29410 0.28 +1.5
3,075,124 - PGA1_c29410 0.29 -0.7
3,075,124 - PGA1_c29410 0.29 +0.9
3,075,124 - PGA1_c29410 0.29 +0.2
3,075,124 - PGA1_c29410 0.29 +0.0
3,075,124 - PGA1_c29410 0.29 -2.4
3,075,124 - PGA1_c29410 0.29 -1.1
3,075,140 + PGA1_c29410 0.30 +0.9
3,075,173 + PGA1_c29410 0.33 +0.8
3,075,205 - PGA1_c29410 0.35 -0.5
3,075,205 - PGA1_c29410 0.35 -0.5
3,075,226 + PGA1_c29410 0.36 +0.0
3,075,228 + PGA1_c29410 0.37 +0.3
3,075,228 + PGA1_c29410 0.37 +0.3
3,075,242 - PGA1_c29410 0.38 -0.2
3,075,252 - PGA1_c29410 0.38 -0.2
3,075,276 + PGA1_c29410 0.40 +0.4
3,075,276 + PGA1_c29410 0.40 +0.3
3,075,284 - PGA1_c29410 0.41 -0.4
3,075,286 + PGA1_c29410 0.41 +0.3
3,075,375 + PGA1_c29410 0.48 -0.3
3,075,375 + PGA1_c29410 0.48 -1.3
3,075,388 - PGA1_c29410 0.49 +2.4
3,075,557 - PGA1_c29410 0.61 -0.1

Or see this region's nucleotide sequence