Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29150

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29120 and PGA1_c29130 are separated by 47 nucleotidesPGA1_c29130 and PGA1_c29140 overlap by 4 nucleotidesPGA1_c29140 and PGA1_c29150 are separated by 98 nucleotidesPGA1_c29150 and PGA1_c29160 are separated by 198 nucleotides PGA1_c29120: PGA1_c29120 - hypothetical protein, at 3,051,555 to 3,051,902 _c29120 PGA1_c29130: PGA1_c29130 - antibiotic biosynthesis monooxygenase-like protein, at 3,051,950 to 3,052,306 _c29130 PGA1_c29140: PGA1_c29140 - NIPSNAP., at 3,052,303 to 3,052,626 _c29140 PGA1_c29150: PGA1_c29150 - hypothetical protein, at 3,052,725 to 3,053,180 _c29150 PGA1_c29160: PGA1_c29160 - HTH-type transcriptional regulator, LysR family, at 3,053,379 to 3,054,284 _c29160 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3051.916 kb on - strandat 3051.973 kb on - strandat 3051.994 kb on - strand, within PGA1_c29130at 3052.106 kb on - strand, within PGA1_c29130at 3052.176 kb on - strand, within PGA1_c29130at 3052.187 kb on - strand, within PGA1_c29130at 3052.198 kb on + strand, within PGA1_c29130at 3052.215 kb on + strand, within PGA1_c29130at 3052.313 kb on - strandat 3052.354 kb on - strand, within PGA1_c29140at 3052.354 kb on - strand, within PGA1_c29140at 3052.362 kb on + strand, within PGA1_c29140at 3052.362 kb on + strand, within PGA1_c29140at 3052.370 kb on - strand, within PGA1_c29140at 3052.370 kb on - strand, within PGA1_c29140at 3052.423 kb on - strand, within PGA1_c29140at 3052.480 kb on - strand, within PGA1_c29140at 3052.480 kb on - strand, within PGA1_c29140at 3052.490 kb on - strand, within PGA1_c29140at 3052.511 kb on - strand, within PGA1_c29140at 3052.556 kb on - strand, within PGA1_c29140at 3052.561 kb on + strand, within PGA1_c29140at 3052.616 kb on - strandat 3052.624 kb on + strandat 3052.695 kb on + strandat 3052.695 kb on + strandat 3052.695 kb on + strandat 3052.695 kb on + strandat 3052.732 kb on + strandat 3052.766 kb on - strandat 3052.820 kb on - strand, within PGA1_c29150at 3052.840 kb on + strand, within PGA1_c29150at 3052.840 kb on + strand, within PGA1_c29150at 3052.840 kb on + strand, within PGA1_c29150at 3052.899 kb on - strand, within PGA1_c29150at 3052.922 kb on - strand, within PGA1_c29150at 3052.974 kb on - strand, within PGA1_c29150at 3053.050 kb on - strand, within PGA1_c29150at 3053.133 kb on + strand, within PGA1_c29150at 3053.139 kb on + strandat 3053.139 kb on + strandat 3053.142 kb on - strandat 3053.142 kb on - strandat 3053.147 kb on - strandat 3053.147 kb on - strandat 3053.147 kb on - strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.156 kb on + strandat 3053.161 kb on + strandat 3053.164 kb on - strandat 3053.164 kb on - strandat 3053.164 kb on - strandat 3053.164 kb on - strandat 3053.197 kb on + strandat 3053.197 kb on + strandat 3053.197 kb on + strandat 3053.198 kb on + strandat 3053.198 kb on + strandat 3053.205 kb on - strandat 3053.206 kb on - strandat 3053.207 kb on + strandat 3053.207 kb on + strandat 3053.207 kb on + strandat 3053.207 kb on + strandat 3053.207 kb on + strandat 3053.215 kb on - strandat 3053.215 kb on - strandat 3053.215 kb on - strandat 3053.260 kb on - strandat 3053.270 kb on - strandat 3053.278 kb on - strandat 3053.308 kb on + strandat 3053.313 kb on + strandat 3053.321 kb on - strandat 3053.477 kb on + strand, within PGA1_c29160at 3053.477 kb on + strand, within PGA1_c29160at 3053.485 kb on - strand, within PGA1_c29160at 3053.492 kb on - strand, within PGA1_c29160at 3053.494 kb on + strand, within PGA1_c29160at 3053.502 kb on + strand, within PGA1_c29160at 3053.502 kb on - strand, within PGA1_c29160at 3053.502 kb on - strand, within PGA1_c29160at 3053.533 kb on - strand, within PGA1_c29160at 3053.551 kb on - strand, within PGA1_c29160at 3053.572 kb on + strand, within PGA1_c29160at 3053.647 kb on + strand, within PGA1_c29160at 3053.648 kb on + strand, within PGA1_c29160at 3053.655 kb on - strand, within PGA1_c29160at 3053.655 kb on - strand, within PGA1_c29160at 3053.655 kb on - strand, within PGA1_c29160at 3053.762 kb on - strand, within PGA1_c29160at 3053.778 kb on - strand, within PGA1_c29160at 3053.798 kb on - strand, within PGA1_c29160at 3053.800 kb on - strand, within PGA1_c29160at 3053.800 kb on - strand, within PGA1_c29160at 3053.841 kb on - strand, within PGA1_c29160at 3053.978 kb on + strand, within PGA1_c29160at 3054.014 kb on + strand, within PGA1_c29160at 3054.015 kb on + strand, within PGA1_c29160at 3054.015 kb on - strand, within PGA1_c29160at 3054.022 kb on + strand, within PGA1_c29160at 3054.022 kb on - strand, within PGA1_c29160at 3054.146 kb on + strand, within PGA1_c29160at 3054.154 kb on - strand, within PGA1_c29160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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3,051,916 - -0.5
3,051,973 - -0.2
3,051,994 - PGA1_c29130 0.12 +0.7
3,052,106 - PGA1_c29130 0.44 -0.3
3,052,176 - PGA1_c29130 0.63 +0.6
3,052,187 - PGA1_c29130 0.66 -0.4
3,052,198 + PGA1_c29130 0.69 -1.0
3,052,215 + PGA1_c29130 0.74 +0.6
3,052,313 - -2.6
3,052,354 - PGA1_c29140 0.16 -2.0
3,052,354 - PGA1_c29140 0.16 -0.6
3,052,362 + PGA1_c29140 0.18 +0.6
3,052,362 + PGA1_c29140 0.18 +0.7
3,052,370 - PGA1_c29140 0.21 +1.0
3,052,370 - PGA1_c29140 0.21 -0.7
3,052,423 - PGA1_c29140 0.37 +1.8
3,052,480 - PGA1_c29140 0.55 -3.0
3,052,480 - PGA1_c29140 0.55 -0.1
3,052,490 - PGA1_c29140 0.58 +0.2
3,052,511 - PGA1_c29140 0.64 -0.6
3,052,556 - PGA1_c29140 0.78 +0.3
3,052,561 + PGA1_c29140 0.80 -0.1
3,052,616 - +0.2
3,052,624 + -0.2
3,052,695 + -0.3
3,052,695 + -0.1
3,052,695 + +0.2
3,052,695 + +1.8
3,052,732 + +0.7
3,052,766 - -0.4
3,052,820 - PGA1_c29150 0.21 +0.6
3,052,840 + PGA1_c29150 0.25 -1.7
3,052,840 + PGA1_c29150 0.25 -1.6
3,052,840 + PGA1_c29150 0.25 -1.2
3,052,899 - PGA1_c29150 0.38 +0.6
3,052,922 - PGA1_c29150 0.43 -0.2
3,052,974 - PGA1_c29150 0.55 -2.2
3,053,050 - PGA1_c29150 0.71 -0.9
3,053,133 + PGA1_c29150 0.89 +0.2
3,053,139 + -0.4
3,053,139 + +0.7
3,053,142 - -0.1
3,053,142 - +0.8
3,053,147 - -0.7
3,053,147 - +0.7
3,053,147 - +0.1
3,053,156 + +0.6
3,053,156 + -0.6
3,053,156 + -0.6
3,053,156 + +0.4
3,053,156 + -0.6
3,053,156 + +0.3
3,053,156 + -0.4
3,053,156 + -0.6
3,053,156 + -0.7
3,053,161 + +1.2
3,053,164 - -0.3
3,053,164 - +0.5
3,053,164 - -0.2
3,053,164 - +0.5
3,053,197 + -0.8
3,053,197 + -0.5
3,053,197 + +0.4
3,053,198 + -0.7
3,053,198 + -0.1
3,053,205 - -0.6
3,053,206 - -0.1
3,053,207 + +1.4
3,053,207 + +0.0
3,053,207 + -0.3
3,053,207 + -1.4
3,053,207 + -1.1
3,053,215 - +0.6
3,053,215 - -0.4
3,053,215 - +0.9
3,053,260 - +0.2
3,053,270 - +0.6
3,053,278 - +0.0
3,053,308 + +0.4
3,053,313 + +0.6
3,053,321 - +0.2
3,053,477 + PGA1_c29160 0.11 -0.9
3,053,477 + PGA1_c29160 0.11 -1.1
3,053,485 - PGA1_c29160 0.12 -0.5
3,053,492 - PGA1_c29160 0.12 +0.0
3,053,494 + PGA1_c29160 0.13 -0.3
3,053,502 + PGA1_c29160 0.14 +1.6
3,053,502 - PGA1_c29160 0.14 +1.2
3,053,502 - PGA1_c29160 0.14 -0.7
3,053,533 - PGA1_c29160 0.17 -0.4
3,053,551 - PGA1_c29160 0.19 +0.5
3,053,572 + PGA1_c29160 0.21 +0.2
3,053,647 + PGA1_c29160 0.30 -0.9
3,053,648 + PGA1_c29160 0.30 +0.5
3,053,655 - PGA1_c29160 0.30 +1.0
3,053,655 - PGA1_c29160 0.30 +0.2
3,053,655 - PGA1_c29160 0.30 +0.2
3,053,762 - PGA1_c29160 0.42 +0.1
3,053,778 - PGA1_c29160 0.44 +0.6
3,053,798 - PGA1_c29160 0.46 -0.4
3,053,800 - PGA1_c29160 0.46 -1.0
3,053,800 - PGA1_c29160 0.46 -1.3
3,053,841 - PGA1_c29160 0.51 -0.2
3,053,978 + PGA1_c29160 0.66 -1.1
3,054,014 + PGA1_c29160 0.70 -1.0
3,054,015 + PGA1_c29160 0.70 -0.7
3,054,015 - PGA1_c29160 0.70 +0.7
3,054,022 + PGA1_c29160 0.71 +0.5
3,054,022 - PGA1_c29160 0.71 +0.2
3,054,146 + PGA1_c29160 0.85 +0.7
3,054,154 - PGA1_c29160 0.86 +1.4

Or see this region's nucleotide sequence