Strain Fitness in Marinobacter adhaerens HP15 around HP15_2704

Experiment: D-Alanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2703 and HP15_2704 are separated by 17 nucleotidesHP15_2704 and HP15_2705 overlap by 4 nucleotides HP15_2703: HP15_2703 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,855,990 to 2,857,354 _2703 HP15_2704: HP15_2704 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,857,372 to 2,858,130 _2704 HP15_2705: HP15_2705 - inner-membrane translocator, at 2,858,127 to 2,859,134 _2705 Position (kb) 2857 2858 2859Strain fitness (log2 ratio) -2 -1 0 1at 2856.393 kb on - strand, within HP15_2703at 2856.393 kb on - strand, within HP15_2703at 2856.393 kb on - strand, within HP15_2703at 2856.393 kb on - strand, within HP15_2703at 2856.469 kb on + strand, within HP15_2703at 2856.558 kb on + strand, within HP15_2703at 2856.558 kb on + strand, within HP15_2703at 2856.626 kb on - strand, within HP15_2703at 2856.626 kb on - strand, within HP15_2703at 2856.666 kb on + strand, within HP15_2703at 2856.719 kb on + strand, within HP15_2703at 2856.920 kb on - strand, within HP15_2703at 2856.961 kb on + strand, within HP15_2703at 2856.966 kb on + strand, within HP15_2703at 2856.969 kb on - strand, within HP15_2703at 2857.046 kb on + strand, within HP15_2703at 2857.131 kb on - strand, within HP15_2703at 2857.230 kb on - strandat 2857.326 kb on + strandat 2857.568 kb on + strand, within HP15_2704at 2857.664 kb on + strand, within HP15_2704at 2857.664 kb on + strand, within HP15_2704at 2857.672 kb on - strand, within HP15_2704at 2857.788 kb on - strand, within HP15_2704at 2857.795 kb on - strand, within HP15_2704at 2857.967 kb on + strand, within HP15_2704at 2857.967 kb on + strand, within HP15_2704at 2857.977 kb on - strand, within HP15_2704at 2857.986 kb on + strand, within HP15_2704at 2858.030 kb on + strand, within HP15_2704at 2858.111 kb on + strandat 2858.221 kb on + strandat 2858.337 kb on - strand, within HP15_2705at 2858.484 kb on + strand, within HP15_2705at 2858.562 kb on + strand, within HP15_2705at 2858.570 kb on - strand, within HP15_2705at 2858.737 kb on - strand, within HP15_2705at 2859.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine
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2,856,393 - HP15_2703 0.30 +0.4
2,856,393 - HP15_2703 0.30 -0.7
2,856,393 - HP15_2703 0.30 -0.3
2,856,393 - HP15_2703 0.30 -0.3
2,856,469 + HP15_2703 0.35 +0.1
2,856,558 + HP15_2703 0.42 +0.5
2,856,558 + HP15_2703 0.42 -0.2
2,856,626 - HP15_2703 0.47 +1.0
2,856,626 - HP15_2703 0.47 -0.4
2,856,666 + HP15_2703 0.50 -0.5
2,856,719 + HP15_2703 0.53 -0.9
2,856,920 - HP15_2703 0.68 +0.6
2,856,961 + HP15_2703 0.71 -0.3
2,856,966 + HP15_2703 0.72 +0.5
2,856,969 - HP15_2703 0.72 +0.0
2,857,046 + HP15_2703 0.77 +0.7
2,857,131 - HP15_2703 0.84 -1.8
2,857,230 - -0.8
2,857,326 + -0.7
2,857,568 + HP15_2704 0.26 -0.7
2,857,664 + HP15_2704 0.38 +0.2
2,857,664 + HP15_2704 0.38 -0.5
2,857,672 - HP15_2704 0.40 -2.1
2,857,788 - HP15_2704 0.55 -0.3
2,857,795 - HP15_2704 0.56 -0.6
2,857,967 + HP15_2704 0.78 -1.5
2,857,967 + HP15_2704 0.78 -1.0
2,857,977 - HP15_2704 0.80 -0.3
2,857,986 + HP15_2704 0.81 -0.0
2,858,030 + HP15_2704 0.87 +1.3
2,858,111 + -0.5
2,858,221 + +0.3
2,858,337 - HP15_2705 0.21 -1.0
2,858,484 + HP15_2705 0.35 -0.3
2,858,562 + HP15_2705 0.43 -0.2
2,858,570 - HP15_2705 0.44 +1.1
2,858,737 - HP15_2705 0.61 -0.6
2,859,116 + -1.5

Or see this region's nucleotide sequence