Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2703 and HP15_2704 are separated by 17 nucleotides HP15_2704 and HP15_2705 overlap by 4 nucleotides
HP15_2703: HP15_2703 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,855,990 to 2,857,354
_2703
HP15_2704: HP15_2704 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,857,372 to 2,858,130
_2704
HP15_2705: HP15_2705 - inner-membrane translocator, at 2,858,127 to 2,859,134
_2705
Position (kb)
2857
2858
2859 Strain fitness (log2 ratio)
-2
-1
0
1 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.393 kb on - strand, within HP15_2703 at 2856.469 kb on + strand, within HP15_2703 at 2856.558 kb on + strand, within HP15_2703 at 2856.558 kb on + strand, within HP15_2703 at 2856.626 kb on - strand, within HP15_2703 at 2856.626 kb on - strand, within HP15_2703 at 2856.666 kb on + strand, within HP15_2703 at 2856.719 kb on + strand, within HP15_2703 at 2856.920 kb on - strand, within HP15_2703 at 2856.961 kb on + strand, within HP15_2703 at 2856.966 kb on + strand, within HP15_2703 at 2856.969 kb on - strand, within HP15_2703 at 2857.046 kb on + strand, within HP15_2703 at 2857.131 kb on - strand, within HP15_2703 at 2857.230 kb on - strand at 2857.326 kb on + strand at 2857.568 kb on + strand, within HP15_2704 at 2857.664 kb on + strand, within HP15_2704 at 2857.664 kb on + strand, within HP15_2704 at 2857.672 kb on - strand, within HP15_2704 at 2857.788 kb on - strand, within HP15_2704 at 2857.795 kb on - strand, within HP15_2704 at 2857.967 kb on + strand, within HP15_2704 at 2857.967 kb on + strand, within HP15_2704 at 2857.977 kb on - strand, within HP15_2704 at 2857.986 kb on + strand, within HP15_2704 at 2858.030 kb on + strand, within HP15_2704 at 2858.111 kb on + strand at 2858.221 kb on + strand at 2858.337 kb on - strand, within HP15_2705 at 2858.484 kb on + strand, within HP15_2705 at 2858.562 kb on + strand, within HP15_2705 at 2858.570 kb on - strand, within HP15_2705 at 2858.737 kb on - strand, within HP15_2705 at 2859.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 2,856,393 - HP15_2703 0.30 +0.4 2,856,393 - HP15_2703 0.30 -0.7 2,856,393 - HP15_2703 0.30 -0.3 2,856,393 - HP15_2703 0.30 -0.3 2,856,469 + HP15_2703 0.35 +0.1 2,856,558 + HP15_2703 0.42 +0.5 2,856,558 + HP15_2703 0.42 -0.2 2,856,626 - HP15_2703 0.47 +1.0 2,856,626 - HP15_2703 0.47 -0.4 2,856,666 + HP15_2703 0.50 -0.5 2,856,719 + HP15_2703 0.53 -0.9 2,856,920 - HP15_2703 0.68 +0.6 2,856,961 + HP15_2703 0.71 -0.3 2,856,966 + HP15_2703 0.72 +0.5 2,856,969 - HP15_2703 0.72 +0.0 2,857,046 + HP15_2703 0.77 +0.7 2,857,131 - HP15_2703 0.84 -1.8 2,857,230 - -0.8 2,857,326 + -0.7 2,857,568 + HP15_2704 0.26 -0.7 2,857,664 + HP15_2704 0.38 +0.2 2,857,664 + HP15_2704 0.38 -0.5 2,857,672 - HP15_2704 0.40 -2.1 2,857,788 - HP15_2704 0.55 -0.3 2,857,795 - HP15_2704 0.56 -0.6 2,857,967 + HP15_2704 0.78 -1.5 2,857,967 + HP15_2704 0.78 -1.0 2,857,977 - HP15_2704 0.80 -0.3 2,857,986 + HP15_2704 0.81 -0.0 2,858,030 + HP15_2704 0.87 +1.3 2,858,111 + -0.5 2,858,221 + +0.3 2,858,337 - HP15_2705 0.21 -1.0 2,858,484 + HP15_2705 0.35 -0.3 2,858,562 + HP15_2705 0.43 -0.2 2,858,570 - HP15_2705 0.44 +1.1 2,858,737 - HP15_2705 0.61 -0.6 2,859,116 + -1.5
Or see this region's nucleotide sequence