Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26610

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c26590 and PGA1_c26600 are separated by 96 nucleotidesPGA1_c26600 and PGA1_c26610 are separated by 64 nucleotidesPGA1_c26610 and PGA1_c26620 are separated by 33 nucleotides PGA1_c26590: PGA1_c26590 - peptidyl-dipeptidase Dcp, at 2,773,524 to 2,775,539 _c26590 PGA1_c26600: PGA1_c26600 - amino acid ABC transporter, permease protein, at 2,775,636 to 2,776,457 _c26600 PGA1_c26610: PGA1_c26610 - amino acid ABC transporter, substrate-binding protein, at 2,776,522 to 2,777,334 _c26610 PGA1_c26620: PGA1_c26620 - putative molybdopterin biosynthesis protein MoeB, at 2,777,368 to 2,778,504 _c26620 Position (kb) 2776 2777 2778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2775.525 kb on - strandat 2775.569 kb on - strandat 2775.663 kb on - strandat 2775.676 kb on + strandat 2775.703 kb on - strandat 2775.707 kb on + strandat 2775.726 kb on - strand, within PGA1_c26600at 2775.731 kb on + strand, within PGA1_c26600at 2775.731 kb on + strand, within PGA1_c26600at 2775.739 kb on - strand, within PGA1_c26600at 2775.772 kb on + strand, within PGA1_c26600at 2775.785 kb on + strand, within PGA1_c26600at 2775.794 kb on + strand, within PGA1_c26600at 2775.806 kb on + strand, within PGA1_c26600at 2775.806 kb on + strand, within PGA1_c26600at 2775.825 kb on + strand, within PGA1_c26600at 2775.825 kb on - strand, within PGA1_c26600at 2775.826 kb on + strand, within PGA1_c26600at 2775.866 kb on + strand, within PGA1_c26600at 2775.940 kb on + strand, within PGA1_c26600at 2775.986 kb on + strand, within PGA1_c26600at 2776.066 kb on + strand, within PGA1_c26600at 2776.075 kb on - strand, within PGA1_c26600at 2776.124 kb on + strand, within PGA1_c26600at 2776.135 kb on + strand, within PGA1_c26600at 2776.135 kb on + strand, within PGA1_c26600at 2776.180 kb on + strand, within PGA1_c26600at 2776.188 kb on - strand, within PGA1_c26600at 2776.295 kb on + strand, within PGA1_c26600at 2776.303 kb on - strand, within PGA1_c26600at 2776.303 kb on - strand, within PGA1_c26600at 2776.323 kb on - strand, within PGA1_c26600at 2776.342 kb on + strand, within PGA1_c26600at 2776.354 kb on + strand, within PGA1_c26600at 2776.429 kb on - strandat 2776.436 kb on + strandat 2776.439 kb on - strandat 2776.450 kb on - strandat 2776.465 kb on - strandat 2776.504 kb on + strandat 2776.514 kb on + strandat 2776.522 kb on - strandat 2776.566 kb on + strandat 2776.577 kb on + strandat 2776.583 kb on + strandat 2776.583 kb on + strandat 2776.607 kb on - strand, within PGA1_c26610at 2776.625 kb on + strand, within PGA1_c26610at 2776.650 kb on - strand, within PGA1_c26610at 2776.656 kb on + strand, within PGA1_c26610at 2776.661 kb on + strand, within PGA1_c26610at 2776.702 kb on + strand, within PGA1_c26610at 2776.710 kb on - strand, within PGA1_c26610at 2776.819 kb on + strand, within PGA1_c26610at 2776.826 kb on - strand, within PGA1_c26610at 2776.873 kb on - strand, within PGA1_c26610at 2776.873 kb on - strand, within PGA1_c26610at 2776.873 kb on - strand, within PGA1_c26610at 2776.873 kb on - strand, within PGA1_c26610at 2777.158 kb on - strand, within PGA1_c26610at 2777.170 kb on - strand, within PGA1_c26610at 2777.237 kb on - strand, within PGA1_c26610at 2777.237 kb on - strand, within PGA1_c26610at 2777.288 kb on - strandat 2777.341 kb on - strandat 2777.375 kb on - strandat 2777.413 kb on + strandat 2777.450 kb on + strandat 2777.451 kb on + strandat 2777.459 kb on - strandat 2777.459 kb on - strandat 2777.533 kb on + strand, within PGA1_c26620at 2777.554 kb on + strand, within PGA1_c26620at 2777.554 kb on + strand, within PGA1_c26620at 2777.554 kb on + strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.615 kb on - strand, within PGA1_c26620at 2777.781 kb on + strand, within PGA1_c26620at 2777.928 kb on + strand, within PGA1_c26620at 2778.036 kb on + strand, within PGA1_c26620at 2778.044 kb on - strand, within PGA1_c26620at 2778.044 kb on - strand, within PGA1_c26620at 2778.059 kb on - strand, within PGA1_c26620at 2778.138 kb on + strand, within PGA1_c26620at 2778.141 kb on - strand, within PGA1_c26620at 2778.226 kb on - strand, within PGA1_c26620at 2778.239 kb on - strand, within PGA1_c26620at 2778.265 kb on - strand, within PGA1_c26620at 2778.265 kb on - strand, within PGA1_c26620

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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2,775,525 - +0.0
2,775,569 - -0.2
2,775,663 - +0.7
2,775,676 + -1.3
2,775,703 - -0.1
2,775,707 + +0.5
2,775,726 - PGA1_c26600 0.11 +0.5
2,775,731 + PGA1_c26600 0.12 +0.2
2,775,731 + PGA1_c26600 0.12 -2.3
2,775,739 - PGA1_c26600 0.13 -1.5
2,775,772 + PGA1_c26600 0.17 -0.9
2,775,785 + PGA1_c26600 0.18 +0.7
2,775,794 + PGA1_c26600 0.19 +0.7
2,775,806 + PGA1_c26600 0.21 +0.2
2,775,806 + PGA1_c26600 0.21 +1.0
2,775,825 + PGA1_c26600 0.23 +0.3
2,775,825 - PGA1_c26600 0.23 -1.8
2,775,826 + PGA1_c26600 0.23 +0.3
2,775,866 + PGA1_c26600 0.28 -1.3
2,775,940 + PGA1_c26600 0.37 -0.9
2,775,986 + PGA1_c26600 0.43 +0.3
2,776,066 + PGA1_c26600 0.52 +0.1
2,776,075 - PGA1_c26600 0.53 +0.8
2,776,124 + PGA1_c26600 0.59 -0.5
2,776,135 + PGA1_c26600 0.61 -0.9
2,776,135 + PGA1_c26600 0.61 -0.2
2,776,180 + PGA1_c26600 0.66 +0.5
2,776,188 - PGA1_c26600 0.67 +0.4
2,776,295 + PGA1_c26600 0.80 +0.2
2,776,303 - PGA1_c26600 0.81 +1.8
2,776,303 - PGA1_c26600 0.81 -2.5
2,776,323 - PGA1_c26600 0.84 +1.1
2,776,342 + PGA1_c26600 0.86 -1.1
2,776,354 + PGA1_c26600 0.87 -1.2
2,776,429 - -0.6
2,776,436 + +0.1
2,776,439 - -0.1
2,776,450 - +0.1
2,776,465 - +0.2
2,776,504 + +0.2
2,776,514 + +0.1
2,776,522 - -0.9
2,776,566 + -0.4
2,776,577 + +0.1
2,776,583 + +0.1
2,776,583 + +0.8
2,776,607 - PGA1_c26610 0.10 -0.2
2,776,625 + PGA1_c26610 0.13 -1.5
2,776,650 - PGA1_c26610 0.16 -2.5
2,776,656 + PGA1_c26610 0.16 -0.3
2,776,661 + PGA1_c26610 0.17 -1.1
2,776,702 + PGA1_c26610 0.22 -0.6
2,776,710 - PGA1_c26610 0.23 -0.7
2,776,819 + PGA1_c26610 0.37 -0.5
2,776,826 - PGA1_c26610 0.37 -0.5
2,776,873 - PGA1_c26610 0.43 +0.2
2,776,873 - PGA1_c26610 0.43 -0.7
2,776,873 - PGA1_c26610 0.43 -2.5
2,776,873 - PGA1_c26610 0.43 -0.6
2,777,158 - PGA1_c26610 0.78 -0.6
2,777,170 - PGA1_c26610 0.80 -0.1
2,777,237 - PGA1_c26610 0.88 +1.1
2,777,237 - PGA1_c26610 0.88 -0.9
2,777,288 - +1.1
2,777,341 - -2.1
2,777,375 - -0.7
2,777,413 + +0.1
2,777,450 + -0.4
2,777,451 + -0.4
2,777,459 - +0.5
2,777,459 - -0.4
2,777,533 + PGA1_c26620 0.15 +1.5
2,777,554 + PGA1_c26620 0.16 +0.5
2,777,554 + PGA1_c26620 0.16 +0.5
2,777,554 + PGA1_c26620 0.16 -0.4
2,777,562 - PGA1_c26620 0.17 -0.2
2,777,562 - PGA1_c26620 0.17 -2.8
2,777,562 - PGA1_c26620 0.17 -1.3
2,777,562 - PGA1_c26620 0.17 -0.5
2,777,615 - PGA1_c26620 0.22 -1.7
2,777,781 + PGA1_c26620 0.36 +0.9
2,777,928 + PGA1_c26620 0.49 +0.8
2,778,036 + PGA1_c26620 0.59 +0.9
2,778,044 - PGA1_c26620 0.59 -0.7
2,778,044 - PGA1_c26620 0.59 +0.4
2,778,059 - PGA1_c26620 0.61 +0.3
2,778,138 + PGA1_c26620 0.68 +0.5
2,778,141 - PGA1_c26620 0.68 -1.4
2,778,226 - PGA1_c26620 0.75 +0.7
2,778,239 - PGA1_c26620 0.77 -1.2
2,778,265 - PGA1_c26620 0.79 +0.7
2,778,265 - PGA1_c26620 0.79 -0.1

Or see this region's nucleotide sequence