Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02580 and PGA1_c02590 are separated by 237 nucleotides PGA1_c02590 and PGA1_c02600 are separated by 4 nucleotides
PGA1_c02580: PGA1_c02580 - putative HTH-type transcriptional regulator pcaQ, at 241,999 to 242,916
_c02580
PGA1_c02590: PGA1_c02590 - putative high-affinity branched-chain amino acid transport system permease protein LivH, at 243,154 to 244,029
_c02590
PGA1_c02600: PGA1_c02600 - putative high-affinity branched-chain amino acid transport system permease protein LivM, at 244,034 to 245,119
_c02600
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 242.177 kb on + strand, within PGA1_c02580 at 242.185 kb on - strand, within PGA1_c02580 at 242.205 kb on - strand, within PGA1_c02580 at 242.236 kb on - strand, within PGA1_c02580 at 242.285 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.429 kb on + strand, within PGA1_c02580 at 242.434 kb on + strand, within PGA1_c02580 at 242.442 kb on - strand, within PGA1_c02580 at 242.513 kb on + strand, within PGA1_c02580 at 242.519 kb on + strand, within PGA1_c02580 at 242.651 kb on + strand, within PGA1_c02580 at 242.718 kb on + strand, within PGA1_c02580 at 242.761 kb on - strand, within PGA1_c02580 at 242.764 kb on + strand, within PGA1_c02580 at 242.830 kb on - strand at 242.852 kb on + strand at 242.854 kb on + strand at 242.865 kb on + strand at 242.924 kb on + strand at 242.924 kb on + strand at 242.953 kb on + strand at 243.024 kb on + strand at 243.040 kb on + strand at 243.055 kb on + strand at 243.062 kb on - strand at 243.064 kb on + strand at 243.067 kb on - strand at 243.067 kb on - strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.097 kb on + strand at 243.105 kb on - strand at 243.150 kb on - strand at 243.161 kb on + strand at 243.169 kb on - strand at 243.182 kb on - strand at 243.221 kb on + strand at 243.221 kb on + strand at 243.226 kb on + strand at 243.226 kb on + strand at 243.229 kb on - strand at 243.282 kb on + strand, within PGA1_c02590 at 243.298 kb on - strand, within PGA1_c02590 at 243.299 kb on + strand, within PGA1_c02590 at 243.307 kb on - strand, within PGA1_c02590 at 243.377 kb on + strand, within PGA1_c02590 at 243.397 kb on + strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.508 kb on - strand, within PGA1_c02590 at 243.604 kb on + strand, within PGA1_c02590 at 243.686 kb on - strand, within PGA1_c02590 at 243.715 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.813 kb on + strand, within PGA1_c02590 at 243.819 kb on + strand, within PGA1_c02590 at 243.826 kb on + strand, within PGA1_c02590 at 243.849 kb on - strand, within PGA1_c02590 at 243.864 kb on + strand, within PGA1_c02590 at 243.901 kb on + strand, within PGA1_c02590 at 243.953 kb on + strand at 243.973 kb on + strand at 243.989 kb on + strand at 243.989 kb on + strand at 244.005 kb on - strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.031 kb on - strand at 244.089 kb on + strand at 244.102 kb on + strand at 244.110 kb on - strand at 244.164 kb on - strand, within PGA1_c02600 at 244.164 kb on - strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.189 kb on - strand, within PGA1_c02600 at 244.211 kb on - strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.248 kb on - strand, within PGA1_c02600 at 244.251 kb on + strand, within PGA1_c02600 at 244.282 kb on + strand, within PGA1_c02600 at 244.295 kb on - strand, within PGA1_c02600 at 244.305 kb on - strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.322 kb on - strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.401 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.419 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.513 kb on - strand, within PGA1_c02600 at 244.544 kb on - strand, within PGA1_c02600 at 244.567 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.619 kb on + strand, within PGA1_c02600 at 244.657 kb on + strand, within PGA1_c02600 at 244.688 kb on + strand, within PGA1_c02600 at 244.725 kb on - strand, within PGA1_c02600 at 244.733 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.784 kb on + strand, within PGA1_c02600 at 244.803 kb on + strand, within PGA1_c02600 at 244.816 kb on + strand, within PGA1_c02600 at 244.913 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.927 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 242,177 + PGA1_c02580 0.19 +0.5 242,185 - PGA1_c02580 0.20 +0.7 242,205 - PGA1_c02580 0.22 -0.5 242,236 - PGA1_c02580 0.26 -0.3 242,285 + PGA1_c02580 0.31 -0.2 242,351 + PGA1_c02580 0.38 +0.3 242,351 + PGA1_c02580 0.38 +0.7 242,429 + PGA1_c02580 0.47 +0.7 242,434 + PGA1_c02580 0.47 -1.9 242,442 - PGA1_c02580 0.48 +1.6 242,513 + PGA1_c02580 0.56 +0.7 242,519 + PGA1_c02580 0.57 -0.1 242,651 + PGA1_c02580 0.71 +0.5 242,718 + PGA1_c02580 0.78 -0.7 242,761 - PGA1_c02580 0.83 -1.1 242,764 + PGA1_c02580 0.83 +0.4 242,830 - -0.3 242,852 + +0.7 242,854 + +0.0 242,865 + -0.6 242,924 + +1.1 242,924 + -0.6 242,953 + -0.1 243,024 + +0.5 243,040 + -1.8 243,055 + +0.8 243,062 - -0.8 243,064 + +0.1 243,067 - -0.5 243,067 - +1.4 243,087 + -0.1 243,087 + +0.2 243,087 + +0.6 243,087 + +1.9 243,087 + +0.5 243,087 + -0.2 243,087 + -0.8 243,087 + +1.5 243,087 + +1.0 243,087 + +0.4 243,087 + -0.3 243,087 + +1.6 243,087 + +0.1 243,087 + +0.7 243,087 + -2.3 243,087 + -0.3 243,087 + -0.5 243,087 + +0.5 243,087 + +0.2 243,087 + -2.4 243,087 + +1.4 243,087 + +0.4 243,087 + -0.2 243,087 + -0.5 243,087 + -1.0 243,087 + -0.8 243,087 + +0.2 243,087 + +0.1 243,087 + -0.6 243,087 + -0.4 243,087 + -1.9 243,087 + -0.3 243,087 + -1.6 243,087 + -1.2 243,095 - -1.0 243,095 - -0.1 243,095 - -1.3 243,095 - +0.8 243,095 - -0.3 243,095 - +1.4 243,095 - -0.8 243,095 - +0.5 243,095 - +0.4 243,095 - -0.9 243,095 - -0.2 243,095 - +0.2 243,095 - -1.4 243,095 - +1.3 243,095 - +1.0 243,097 + -1.3 243,105 - +1.5 243,150 - +0.7 243,161 + +0.0 243,169 - -0.6 243,182 - +0.8 243,221 + +0.0 243,221 + -1.1 243,226 + +0.2 243,226 + +0.3 243,229 - +0.9 243,282 + PGA1_c02590 0.15 +0.3 243,298 - PGA1_c02590 0.16 -0.9 243,299 + PGA1_c02590 0.17 -0.9 243,307 - PGA1_c02590 0.17 +0.0 243,377 + PGA1_c02590 0.25 -0.9 243,397 + PGA1_c02590 0.28 +0.2 243,453 - PGA1_c02590 0.34 -0.1 243,453 - PGA1_c02590 0.34 -0.5 243,508 - PGA1_c02590 0.40 -0.3 243,604 + PGA1_c02590 0.51 -0.7 243,686 - PGA1_c02590 0.61 -0.6 243,715 + PGA1_c02590 0.64 -0.2 243,724 + PGA1_c02590 0.65 -1.3 243,724 + PGA1_c02590 0.65 +0.2 243,813 + PGA1_c02590 0.75 -1.6 243,819 + PGA1_c02590 0.76 +1.7 243,826 + PGA1_c02590 0.77 -0.1 243,849 - PGA1_c02590 0.79 +0.5 243,864 + PGA1_c02590 0.81 -1.4 243,901 + PGA1_c02590 0.85 -1.8 243,953 + +0.4 243,973 + +0.2 243,989 + -0.6 243,989 + +0.3 244,005 - +1.1 244,023 + -0.3 244,023 + -0.9 244,023 + +0.0 244,023 + -0.1 244,031 - +0.9 244,089 + -0.3 244,102 + +0.5 244,110 - +1.7 244,164 - PGA1_c02600 0.12 +0.4 244,164 - PGA1_c02600 0.12 +0.6 244,181 + PGA1_c02600 0.14 -0.3 244,181 + PGA1_c02600 0.14 +1.7 244,181 + PGA1_c02600 0.14 +0.6 244,181 + PGA1_c02600 0.14 -0.2 244,181 + PGA1_c02600 0.14 -0.9 244,189 - PGA1_c02600 0.14 +1.7 244,211 - PGA1_c02600 0.16 +0.2 244,240 + PGA1_c02600 0.19 +1.0 244,240 + PGA1_c02600 0.19 +0.3 244,240 + PGA1_c02600 0.19 -0.6 244,240 + PGA1_c02600 0.19 +0.2 244,240 + PGA1_c02600 0.19 +1.3 244,240 + PGA1_c02600 0.19 -0.5 244,248 - PGA1_c02600 0.20 -0.1 244,251 + PGA1_c02600 0.20 -0.2 244,282 + PGA1_c02600 0.23 -0.2 244,295 - PGA1_c02600 0.24 +0.1 244,305 - PGA1_c02600 0.25 -0.6 244,306 + PGA1_c02600 0.25 +1.2 244,306 + PGA1_c02600 0.25 -0.1 244,322 - PGA1_c02600 0.27 -0.3 244,398 + PGA1_c02600 0.34 -0.5 244,398 + PGA1_c02600 0.34 +0.3 244,398 + PGA1_c02600 0.34 +0.3 244,398 + PGA1_c02600 0.34 +0.9 244,398 + PGA1_c02600 0.34 -1.6 244,398 + PGA1_c02600 0.34 -0.9 244,398 + PGA1_c02600 0.34 -0.1 244,398 + PGA1_c02600 0.34 -1.5 244,398 + PGA1_c02600 0.34 -0.9 244,398 + PGA1_c02600 0.34 -0.5 244,398 + PGA1_c02600 0.34 -0.8 244,398 + PGA1_c02600 0.34 -2.1 244,398 + PGA1_c02600 0.34 -0.3 244,398 + PGA1_c02600 0.34 -0.3 244,398 + PGA1_c02600 0.34 +0.9 244,401 - PGA1_c02600 0.34 +0.5 244,406 - PGA1_c02600 0.34 +0.8 244,406 - PGA1_c02600 0.34 -1.6 244,406 - PGA1_c02600 0.34 +0.6 244,406 - PGA1_c02600 0.34 -0.6 244,406 - PGA1_c02600 0.34 +0.5 244,419 + PGA1_c02600 0.35 -0.6 244,465 + PGA1_c02600 0.40 +0.1 244,465 + PGA1_c02600 0.40 +0.5 244,473 - PGA1_c02600 0.40 +0.9 244,473 - PGA1_c02600 0.40 -0.7 244,513 - PGA1_c02600 0.44 +1.6 244,544 - PGA1_c02600 0.47 -0.1 244,567 + PGA1_c02600 0.49 -0.1 244,577 + PGA1_c02600 0.50 +0.4 244,577 + PGA1_c02600 0.50 -1.2 244,577 + PGA1_c02600 0.50 +0.5 244,619 + PGA1_c02600 0.54 +0.7 244,657 + PGA1_c02600 0.57 -0.8 244,688 + PGA1_c02600 0.60 -1.8 244,725 - PGA1_c02600 0.64 +1.7 244,733 + PGA1_c02600 0.64 +0.4 244,737 + PGA1_c02600 0.65 +0.3 244,737 + PGA1_c02600 0.65 +1.9 244,737 + PGA1_c02600 0.65 -0.9 244,784 + PGA1_c02600 0.69 +1.4 244,803 + PGA1_c02600 0.71 +0.8 244,816 + PGA1_c02600 0.72 -0.3 244,913 + PGA1_c02600 0.81 +1.2 244,919 + PGA1_c02600 0.81 +0.9 244,919 + PGA1_c02600 0.81 +0.4 244,919 + PGA1_c02600 0.81 +0.3 244,924 + PGA1_c02600 0.82 +0.0 244,924 + PGA1_c02600 0.82 +0.3 244,927 - PGA1_c02600 0.82 +0.4 244,982 - PGA1_c02600 0.87 +0.7 244,982 - PGA1_c02600 0.87 +0.6
Or see this region's nucleotide sequence