Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c22480 and PGA1_c22490 are separated by 225 nucleotides PGA1_c22490 and PGA1_c22500 are separated by 595 nucleotides PGA1_c22500 and PGA1_c22510 are separated by 89 nucleotides
PGA1_c22480: PGA1_c22480 - hypothetical protein, at 2,332,436 to 2,333,203
_c22480
PGA1_c22490: PGA1_c22490 - hypothetical protein, at 2,333,429 to 2,333,863
_c22490
PGA1_c22500: PGA1_c22500 - hypothetical protein, at 2,334,459 to 2,334,719
_c22500
PGA1_c22510: PGA1_c22510 - hypothetical protein, at 2,334,809 to 2,335,072
_c22510
Position (kb)
2333
2334 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2332.432 kb on + strand at 2332.440 kb on - strand at 2332.440 kb on - strand at 2332.440 kb on - strand at 2332.475 kb on + strand at 2332.481 kb on + strand at 2332.481 kb on + strand at 2332.559 kb on + strand, within PGA1_c22480 at 2332.562 kb on - strand, within PGA1_c22480 at 2332.584 kb on + strand, within PGA1_c22480 at 2332.592 kb on - strand, within PGA1_c22480 at 2332.666 kb on + strand, within PGA1_c22480 at 2332.807 kb on + strand, within PGA1_c22480 at 2332.807 kb on + strand, within PGA1_c22480 at 2332.807 kb on + strand, within PGA1_c22480 at 2332.815 kb on - strand, within PGA1_c22480 at 2332.819 kb on + strand, within PGA1_c22480 at 2332.827 kb on + strand, within PGA1_c22480 at 2332.827 kb on - strand, within PGA1_c22480 at 2332.827 kb on - strand, within PGA1_c22480 at 2332.827 kb on - strand, within PGA1_c22480 at 2333.055 kb on + strand, within PGA1_c22480 at 2333.055 kb on + strand, within PGA1_c22480 at 2333.063 kb on - strand, within PGA1_c22480 at 2333.063 kb on - strand, within PGA1_c22480 at 2333.068 kb on - strand, within PGA1_c22480 at 2333.211 kb on - strand at 2333.211 kb on - strand at 2333.229 kb on - strand at 2333.229 kb on - strand at 2333.229 kb on - strand at 2333.373 kb on - strand at 2333.481 kb on - strand, within PGA1_c22490 at 2333.498 kb on - strand, within PGA1_c22490 at 2333.626 kb on + strand, within PGA1_c22490 at 2333.647 kb on + strand, within PGA1_c22490 at 2333.647 kb on - strand, within PGA1_c22490 at 2333.818 kb on - strand, within PGA1_c22490 at 2333.855 kb on - strand at 2333.901 kb on - strand at 2333.925 kb on - strand at 2333.940 kb on + strand at 2334.099 kb on + strand at 2334.131 kb on + strand at 2334.165 kb on + strand at 2334.165 kb on + strand at 2334.173 kb on - strand at 2334.173 kb on - strand at 2334.173 kb on - strand at 2334.273 kb on - strand at 2334.281 kb on - strand at 2334.366 kb on + strand at 2334.366 kb on + strand at 2334.540 kb on - strand, within PGA1_c22500 at 2334.571 kb on - strand, within PGA1_c22500 at 2334.575 kb on - strand, within PGA1_c22500 at 2334.674 kb on + strand, within PGA1_c22500 at 2334.674 kb on + strand, within PGA1_c22500 at 2334.674 kb on + strand, within PGA1_c22500 at 2334.674 kb on + strand, within PGA1_c22500 at 2334.742 kb on + strand at 2334.745 kb on - strand at 2334.839 kb on - strand, within PGA1_c22510 at 2334.841 kb on + strand, within PGA1_c22510
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 2,332,432 + +1.3 2,332,440 - -2.5 2,332,440 - +0.7 2,332,440 - -1.5 2,332,475 + +0.6 2,332,481 + +0.6 2,332,481 + -0.1 2,332,559 + PGA1_c22480 0.16 +1.0 2,332,562 - PGA1_c22480 0.16 +1.5 2,332,584 + PGA1_c22480 0.19 +0.6 2,332,592 - PGA1_c22480 0.20 +0.7 2,332,666 + PGA1_c22480 0.30 -1.0 2,332,807 + PGA1_c22480 0.48 -0.3 2,332,807 + PGA1_c22480 0.48 -2.5 2,332,807 + PGA1_c22480 0.48 -1.7 2,332,815 - PGA1_c22480 0.49 +0.2 2,332,819 + PGA1_c22480 0.50 -0.2 2,332,827 + PGA1_c22480 0.51 +0.0 2,332,827 - PGA1_c22480 0.51 +1.0 2,332,827 - PGA1_c22480 0.51 -0.1 2,332,827 - PGA1_c22480 0.51 +1.9 2,333,055 + PGA1_c22480 0.81 +0.6 2,333,055 + PGA1_c22480 0.81 +0.7 2,333,063 - PGA1_c22480 0.82 +1.3 2,333,063 - PGA1_c22480 0.82 +0.1 2,333,068 - PGA1_c22480 0.82 +0.5 2,333,211 - +0.5 2,333,211 - +2.0 2,333,229 - -1.0 2,333,229 - -0.1 2,333,229 - -1.1 2,333,373 - -0.5 2,333,481 - PGA1_c22490 0.12 -0.7 2,333,498 - PGA1_c22490 0.16 +0.6 2,333,626 + PGA1_c22490 0.45 +0.9 2,333,647 + PGA1_c22490 0.50 +0.5 2,333,647 - PGA1_c22490 0.50 -0.8 2,333,818 - PGA1_c22490 0.89 +0.9 2,333,855 - -0.1 2,333,901 - +0.8 2,333,925 - +0.2 2,333,940 + -0.8 2,334,099 + -0.0 2,334,131 + -0.5 2,334,165 + +0.6 2,334,165 + -0.1 2,334,173 - -0.6 2,334,173 - -0.2 2,334,173 - +2.1 2,334,273 - +1.3 2,334,281 - +0.2 2,334,366 + -0.3 2,334,366 + +1.6 2,334,540 - PGA1_c22500 0.31 -0.5 2,334,571 - PGA1_c22500 0.43 +0.2 2,334,575 - PGA1_c22500 0.44 +0.2 2,334,674 + PGA1_c22500 0.82 +1.4 2,334,674 + PGA1_c22500 0.82 +1.6 2,334,674 + PGA1_c22500 0.82 -1.5 2,334,674 + PGA1_c22500 0.82 +0.0 2,334,742 + +0.6 2,334,745 - -3.0 2,334,839 - PGA1_c22510 0.11 +0.1 2,334,841 + PGA1_c22510 0.12 +0.0
Or see this region's nucleotide sequence