Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22490

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c22480 and PGA1_c22490 are separated by 225 nucleotidesPGA1_c22490 and PGA1_c22500 are separated by 595 nucleotidesPGA1_c22500 and PGA1_c22510 are separated by 89 nucleotides PGA1_c22480: PGA1_c22480 - hypothetical protein, at 2,332,436 to 2,333,203 _c22480 PGA1_c22490: PGA1_c22490 - hypothetical protein, at 2,333,429 to 2,333,863 _c22490 PGA1_c22500: PGA1_c22500 - hypothetical protein, at 2,334,459 to 2,334,719 _c22500 PGA1_c22510: PGA1_c22510 - hypothetical protein, at 2,334,809 to 2,335,072 _c22510 Position (kb) 2333 2334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2332.432 kb on + strandat 2332.440 kb on - strandat 2332.440 kb on - strandat 2332.440 kb on - strandat 2332.475 kb on + strandat 2332.481 kb on + strandat 2332.481 kb on + strandat 2332.559 kb on + strand, within PGA1_c22480at 2332.562 kb on - strand, within PGA1_c22480at 2332.584 kb on + strand, within PGA1_c22480at 2332.592 kb on - strand, within PGA1_c22480at 2332.666 kb on + strand, within PGA1_c22480at 2332.807 kb on + strand, within PGA1_c22480at 2332.807 kb on + strand, within PGA1_c22480at 2332.807 kb on + strand, within PGA1_c22480at 2332.815 kb on - strand, within PGA1_c22480at 2332.819 kb on + strand, within PGA1_c22480at 2332.827 kb on + strand, within PGA1_c22480at 2332.827 kb on - strand, within PGA1_c22480at 2332.827 kb on - strand, within PGA1_c22480at 2332.827 kb on - strand, within PGA1_c22480at 2333.055 kb on + strand, within PGA1_c22480at 2333.055 kb on + strand, within PGA1_c22480at 2333.063 kb on - strand, within PGA1_c22480at 2333.063 kb on - strand, within PGA1_c22480at 2333.068 kb on - strand, within PGA1_c22480at 2333.211 kb on - strandat 2333.211 kb on - strandat 2333.229 kb on - strandat 2333.229 kb on - strandat 2333.229 kb on - strandat 2333.373 kb on - strandat 2333.481 kb on - strand, within PGA1_c22490at 2333.498 kb on - strand, within PGA1_c22490at 2333.626 kb on + strand, within PGA1_c22490at 2333.647 kb on + strand, within PGA1_c22490at 2333.647 kb on - strand, within PGA1_c22490at 2333.818 kb on - strand, within PGA1_c22490at 2333.855 kb on - strandat 2333.901 kb on - strandat 2333.925 kb on - strandat 2333.940 kb on + strandat 2334.099 kb on + strandat 2334.131 kb on + strandat 2334.165 kb on + strandat 2334.165 kb on + strandat 2334.173 kb on - strandat 2334.173 kb on - strandat 2334.173 kb on - strandat 2334.273 kb on - strandat 2334.281 kb on - strandat 2334.366 kb on + strandat 2334.366 kb on + strandat 2334.540 kb on - strand, within PGA1_c22500at 2334.571 kb on - strand, within PGA1_c22500at 2334.575 kb on - strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.742 kb on + strandat 2334.745 kb on - strandat 2334.839 kb on - strand, within PGA1_c22510at 2334.841 kb on + strand, within PGA1_c22510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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2,332,432 + +1.3
2,332,440 - -2.5
2,332,440 - +0.7
2,332,440 - -1.5
2,332,475 + +0.6
2,332,481 + +0.6
2,332,481 + -0.1
2,332,559 + PGA1_c22480 0.16 +1.0
2,332,562 - PGA1_c22480 0.16 +1.5
2,332,584 + PGA1_c22480 0.19 +0.6
2,332,592 - PGA1_c22480 0.20 +0.7
2,332,666 + PGA1_c22480 0.30 -1.0
2,332,807 + PGA1_c22480 0.48 -0.3
2,332,807 + PGA1_c22480 0.48 -2.5
2,332,807 + PGA1_c22480 0.48 -1.7
2,332,815 - PGA1_c22480 0.49 +0.2
2,332,819 + PGA1_c22480 0.50 -0.2
2,332,827 + PGA1_c22480 0.51 +0.0
2,332,827 - PGA1_c22480 0.51 +1.0
2,332,827 - PGA1_c22480 0.51 -0.1
2,332,827 - PGA1_c22480 0.51 +1.9
2,333,055 + PGA1_c22480 0.81 +0.6
2,333,055 + PGA1_c22480 0.81 +0.7
2,333,063 - PGA1_c22480 0.82 +1.3
2,333,063 - PGA1_c22480 0.82 +0.1
2,333,068 - PGA1_c22480 0.82 +0.5
2,333,211 - +0.5
2,333,211 - +2.0
2,333,229 - -1.0
2,333,229 - -0.1
2,333,229 - -1.1
2,333,373 - -0.5
2,333,481 - PGA1_c22490 0.12 -0.7
2,333,498 - PGA1_c22490 0.16 +0.6
2,333,626 + PGA1_c22490 0.45 +0.9
2,333,647 + PGA1_c22490 0.50 +0.5
2,333,647 - PGA1_c22490 0.50 -0.8
2,333,818 - PGA1_c22490 0.89 +0.9
2,333,855 - -0.1
2,333,901 - +0.8
2,333,925 - +0.2
2,333,940 + -0.8
2,334,099 + -0.0
2,334,131 + -0.5
2,334,165 + +0.6
2,334,165 + -0.1
2,334,173 - -0.6
2,334,173 - -0.2
2,334,173 - +2.1
2,334,273 - +1.3
2,334,281 - +0.2
2,334,366 + -0.3
2,334,366 + +1.6
2,334,540 - PGA1_c22500 0.31 -0.5
2,334,571 - PGA1_c22500 0.43 +0.2
2,334,575 - PGA1_c22500 0.44 +0.2
2,334,674 + PGA1_c22500 0.82 +1.4
2,334,674 + PGA1_c22500 0.82 +1.6
2,334,674 + PGA1_c22500 0.82 -1.5
2,334,674 + PGA1_c22500 0.82 +0.0
2,334,742 + +0.6
2,334,745 - -3.0
2,334,839 - PGA1_c22510 0.11 +0.1
2,334,841 + PGA1_c22510 0.12 +0.0

Or see this region's nucleotide sequence