Strain Fitness in Marinobacter adhaerens HP15 around HP15_2031

Experiment: D-Alanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2029 and HP15_2030 are separated by 16 nucleotidesHP15_2030 and HP15_2031 are separated by 203 nucleotidesHP15_2031 and HP15_2032 are separated by 0 nucleotides HP15_2029: HP15_2029 - permease perM, at 2,129,258 to 2,130,337 _2029 HP15_2030: HP15_2030 - protein containing SirA-like domain, at 2,130,354 to 2,130,581 _2030 HP15_2031: HP15_2031 - putative Zn-dependent protease, contains TPR repeats, at 2,130,785 to 2,132,217 _2031 HP15_2032: HP15_2032 - quinolinate synthetase complex, A subunit, at 2,132,218 to 2,133,279 _2032 Position (kb) 2130 2131 2132 2133Strain fitness (log2 ratio) -2 -1 0 1at 2129.791 kb on + strand, within HP15_2029at 2129.794 kb on - strand, within HP15_2029at 2129.871 kb on + strand, within HP15_2029at 2129.925 kb on - strand, within HP15_2029at 2130.192 kb on - strand, within HP15_2029at 2130.207 kb on + strand, within HP15_2029at 2130.267 kb on + strandat 2130.663 kb on + strandat 2130.747 kb on - strandat 2130.803 kb on - strandat 2131.079 kb on - strand, within HP15_2031at 2131.172 kb on - strand, within HP15_2031at 2131.172 kb on - strand, within HP15_2031at 2131.337 kb on - strand, within HP15_2031at 2131.643 kb on + strand, within HP15_2031at 2131.723 kb on - strand, within HP15_2031at 2132.116 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine
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2,129,791 + HP15_2029 0.49 -0.7
2,129,794 - HP15_2029 0.50 +1.3
2,129,871 + HP15_2029 0.57 -0.7
2,129,925 - HP15_2029 0.62 -0.1
2,130,192 - HP15_2029 0.86 -0.9
2,130,207 + HP15_2029 0.88 -0.0
2,130,267 + +0.8
2,130,663 + -0.2
2,130,747 - -0.7
2,130,803 - -0.7
2,131,079 - HP15_2031 0.21 -1.7
2,131,172 - HP15_2031 0.27 -1.1
2,131,172 - HP15_2031 0.27 -0.1
2,131,337 - HP15_2031 0.39 -1.5
2,131,643 + HP15_2031 0.60 -2.7
2,131,723 - HP15_2031 0.65 -0.7
2,132,116 - -1.2

Or see this region's nucleotide sequence