Experiment: D-Alanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1608 and HP15_1609 are separated by 2 nucleotides HP15_1609 and HP15_1610 are separated by 3 nucleotides HP15_1610 and HP15_1611 are separated by 56 nucleotides
HP15_1608: HP15_1608 - general secretion pathway protein K-like protein, at 1,703,810 to 1,704,814
_1608
HP15_1609: HP15_1609 - general secretion pathway protein L, at 1,704,817 to 1,706,121
_1609
HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655
_1610
HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383
_1611
Position (kb)
1704
1705
1706
1707 Strain fitness (log2 ratio)
-2
-1
0
1 at 1703.819 kb on + strand at 1704.070 kb on + strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.147 kb on - strand, within HP15_1608 at 1704.351 kb on - strand, within HP15_1608 at 1704.537 kb on - strand, within HP15_1608 at 1704.563 kb on + strand, within HP15_1608 at 1704.873 kb on - strand at 1704.995 kb on - strand, within HP15_1609 at 1705.007 kb on + strand, within HP15_1609 at 1705.007 kb on + strand, within HP15_1609 at 1705.015 kb on - strand, within HP15_1609 at 1705.094 kb on - strand, within HP15_1609 at 1705.408 kb on - strand, within HP15_1609 at 1705.504 kb on - strand, within HP15_1609 at 1705.638 kb on + strand, within HP15_1609 at 1706.018 kb on - strand at 1706.215 kb on + strand, within HP15_1610 at 1706.531 kb on + strand, within HP15_1610 at 1706.596 kb on + strand, within HP15_1610 at 1706.604 kb on - strand at 1706.799 kb on - strand, within HP15_1611 at 1707.033 kb on + strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine remove 1,703,819 + +0.3 1,704,070 + HP15_1608 0.26 -0.9 1,704,078 - HP15_1608 0.27 -0.3 1,704,078 - HP15_1608 0.27 -0.2 1,704,147 - HP15_1608 0.34 -0.7 1,704,351 - HP15_1608 0.54 +0.3 1,704,537 - HP15_1608 0.72 +0.1 1,704,563 + HP15_1608 0.75 -0.0 1,704,873 - -0.3 1,704,995 - HP15_1609 0.14 -0.7 1,705,007 + HP15_1609 0.15 -1.2 1,705,007 + HP15_1609 0.15 -1.5 1,705,015 - HP15_1609 0.15 -0.5 1,705,094 - HP15_1609 0.21 -0.2 1,705,408 - HP15_1609 0.45 -0.2 1,705,504 - HP15_1609 0.53 -0.8 1,705,638 + HP15_1609 0.63 +0.1 1,706,018 - -1.3 1,706,215 + HP15_1610 0.17 +0.1 1,706,531 + HP15_1610 0.76 -2.1 1,706,596 + HP15_1610 0.89 -0.1 1,706,604 - +1.0 1,706,799 - HP15_1611 0.13 +0.0 1,707,033 + HP15_1611 0.48 +0.2 1,707,053 - HP15_1611 0.51 +0.1 1,707,053 - HP15_1611 0.51 +0.1
Or see this region's nucleotide sequence