Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16420

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16410 and PGA1_c16420 are separated by 58 nucleotidesPGA1_c16420 and PGA1_c16430 overlap by 4 nucleotidesPGA1_c16430 and PGA1_c16440 are separated by 92 nucleotides PGA1_c16410: PGA1_c16410 - ribosomal large subunit pseudouridine synthase E, at 1,702,116 to 1,702,814 _c16410 PGA1_c16420: PGA1_c16420 - putative phospholipase / carboxylesterase, at 1,702,873 to 1,703,538 _c16420 PGA1_c16430: PGA1_c16430 - putative DNA repair protein, at 1,703,535 to 1,704,203 _c16430 PGA1_c16440: PGA1_c16440 - MFS transporter, at 1,704,296 to 1,705,522 _c16440 Position (kb) 1702 1703 1704Strain fitness (log2 ratio) -1 0 1 2at 1702.029 kb on + strandat 1702.039 kb on + strandat 1702.068 kb on - strandat 1702.071 kb on + strandat 1702.143 kb on + strandat 1702.221 kb on - strand, within PGA1_c16410at 1702.237 kb on - strand, within PGA1_c16410at 1702.360 kb on - strand, within PGA1_c16410at 1702.360 kb on - strand, within PGA1_c16410at 1702.360 kb on - strand, within PGA1_c16410at 1702.391 kb on + strand, within PGA1_c16410at 1702.438 kb on - strand, within PGA1_c16410at 1702.470 kb on - strand, within PGA1_c16410at 1702.483 kb on - strand, within PGA1_c16410at 1702.514 kb on - strand, within PGA1_c16410at 1702.519 kb on - strand, within PGA1_c16410at 1702.699 kb on - strand, within PGA1_c16410at 1702.699 kb on - strand, within PGA1_c16410at 1702.725 kb on - strand, within PGA1_c16410at 1702.725 kb on - strand, within PGA1_c16410at 1702.735 kb on - strand, within PGA1_c16410at 1702.735 kb on - strand, within PGA1_c16410at 1702.808 kb on + strandat 1702.808 kb on + strandat 1702.808 kb on + strandat 1702.808 kb on + strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.816 kb on - strandat 1702.858 kb on - strandat 1702.919 kb on - strandat 1702.933 kb on + strandat 1702.940 kb on + strand, within PGA1_c16420at 1703.213 kb on - strand, within PGA1_c16420at 1703.233 kb on - strand, within PGA1_c16420at 1703.392 kb on + strand, within PGA1_c16420at 1703.520 kb on - strandat 1703.556 kb on - strandat 1703.597 kb on - strandat 1703.644 kb on + strand, within PGA1_c16430at 1703.644 kb on + strand, within PGA1_c16430at 1703.683 kb on + strand, within PGA1_c16430at 1703.691 kb on - strand, within PGA1_c16430at 1703.691 kb on - strand, within PGA1_c16430at 1703.709 kb on + strand, within PGA1_c16430at 1703.819 kb on + strand, within PGA1_c16430at 1703.827 kb on - strand, within PGA1_c16430at 1703.827 kb on - strand, within PGA1_c16430at 1703.851 kb on + strand, within PGA1_c16430at 1703.857 kb on - strand, within PGA1_c16430at 1703.888 kb on + strand, within PGA1_c16430at 1703.888 kb on + strand, within PGA1_c16430at 1703.940 kb on + strand, within PGA1_c16430at 1704.061 kb on + strand, within PGA1_c16430at 1704.071 kb on + strand, within PGA1_c16430at 1704.072 kb on - strand, within PGA1_c16430at 1704.252 kb on + strandat 1704.266 kb on - strandat 1704.410 kb on - strandat 1704.419 kb on + strand, within PGA1_c16440at 1704.487 kb on - strand, within PGA1_c16440at 1704.520 kb on + strand, within PGA1_c16440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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1,702,029 + +2.2
1,702,039 + +1.0
1,702,068 - +0.7
1,702,071 + -0.1
1,702,143 + -0.6
1,702,221 - PGA1_c16410 0.15 +0.7
1,702,237 - PGA1_c16410 0.17 -0.1
1,702,360 - PGA1_c16410 0.35 +0.6
1,702,360 - PGA1_c16410 0.35 -1.6
1,702,360 - PGA1_c16410 0.35 -0.4
1,702,391 + PGA1_c16410 0.39 +0.3
1,702,438 - PGA1_c16410 0.46 +1.6
1,702,470 - PGA1_c16410 0.51 -1.1
1,702,483 - PGA1_c16410 0.53 +0.4
1,702,514 - PGA1_c16410 0.57 -0.3
1,702,519 - PGA1_c16410 0.58 +0.4
1,702,699 - PGA1_c16410 0.83 +0.3
1,702,699 - PGA1_c16410 0.83 -1.4
1,702,725 - PGA1_c16410 0.87 -1.0
1,702,725 - PGA1_c16410 0.87 -0.8
1,702,735 - PGA1_c16410 0.89 -1.6
1,702,735 - PGA1_c16410 0.89 +0.1
1,702,808 + +0.9
1,702,808 + +0.3
1,702,808 + +0.3
1,702,808 + -0.4
1,702,816 - +0.4
1,702,816 - -0.9
1,702,816 - +0.4
1,702,816 - +0.9
1,702,816 - +0.9
1,702,816 - -0.2
1,702,816 - -0.7
1,702,816 - -0.9
1,702,816 - -0.6
1,702,816 - -0.3
1,702,858 - +1.3
1,702,919 - -0.4
1,702,933 + -0.6
1,702,940 + PGA1_c16420 0.10 +0.5
1,703,213 - PGA1_c16420 0.51 +0.4
1,703,233 - PGA1_c16420 0.54 +1.3
1,703,392 + PGA1_c16420 0.78 -1.1
1,703,520 - -0.3
1,703,556 - +1.2
1,703,597 - -0.0
1,703,644 + PGA1_c16430 0.16 -0.3
1,703,644 + PGA1_c16430 0.16 +0.0
1,703,683 + PGA1_c16430 0.22 -0.1
1,703,691 - PGA1_c16430 0.23 +0.4
1,703,691 - PGA1_c16430 0.23 -1.2
1,703,709 + PGA1_c16430 0.26 +0.7
1,703,819 + PGA1_c16430 0.42 -0.2
1,703,827 - PGA1_c16430 0.44 +0.1
1,703,827 - PGA1_c16430 0.44 +1.3
1,703,851 + PGA1_c16430 0.47 -0.0
1,703,857 - PGA1_c16430 0.48 +0.8
1,703,888 + PGA1_c16430 0.53 -1.1
1,703,888 + PGA1_c16430 0.53 +1.1
1,703,940 + PGA1_c16430 0.61 -0.4
1,704,061 + PGA1_c16430 0.79 -0.3
1,704,071 + PGA1_c16430 0.80 +0.6
1,704,072 - PGA1_c16430 0.80 -0.1
1,704,252 + -0.1
1,704,266 - -0.5
1,704,410 - -1.6
1,704,419 + PGA1_c16440 0.10 +1.4
1,704,487 - PGA1_c16440 0.16 +0.2
1,704,520 + PGA1_c16440 0.18 -1.6

Or see this region's nucleotide sequence