Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16320 and PGA1_c16330 are separated by 295 nucleotides PGA1_c16330 and PGA1_c16340 are separated by 178 nucleotides PGA1_c16340 and PGA1_c16350 are separated by 2 nucleotides PGA1_c16350 and PGA1_c16360 are separated by 51 nucleotides
PGA1_c16320: PGA1_c16320 - putative metal dependent phosphohydrolase, at 1,694,292 to 1,695,770
_c16320
PGA1_c16330: PGA1_c16330 - tRNA-Leu, at 1,696,066 to 1,696,151
_c16330
PGA1_c16340: PGA1_c16340 - Predicted membrane protein, at 1,696,330 to 1,696,908
_c16340
PGA1_c16350: PGA1_c16350 - Disulfide bond formation protein DsbB, at 1,696,911 to 1,697,381
_c16350
PGA1_c16360: PGA1_c16360 - putative transriptional regulator, AsnC family, at 1,697,433 to 1,697,870
_c16360
Position (kb) 1696
1697 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1695.349 kb on + strand, within PGA1_c16320 at 1695.374 kb on + strand, within PGA1_c16320 at 1695.401 kb on + strand, within PGA1_c16320 at 1695.413 kb on + strand, within PGA1_c16320 at 1695.413 kb on + strand, within PGA1_c16320 at 1695.424 kb on + strand, within PGA1_c16320 at 1695.429 kb on + strand, within PGA1_c16320 at 1695.429 kb on + strand, within PGA1_c16320 at 1695.437 kb on - strand, within PGA1_c16320 at 1695.540 kb on - strand, within PGA1_c16320 at 1695.540 kb on - strand, within PGA1_c16320 at 1695.540 kb on - strand, within PGA1_c16320 at 1695.541 kb on - strand, within PGA1_c16320 at 1695.611 kb on + strand, within PGA1_c16320 at 1695.659 kb on - strand at 1695.668 kb on + strand at 1695.676 kb on - strand at 1695.676 kb on - strand at 1695.763 kb on + strand at 1695.818 kb on + strand at 1695.833 kb on + strand at 1695.833 kb on + strand at 1695.961 kb on + strand at 1696.233 kb on - strand at 1696.248 kb on - strand at 1696.311 kb on + strand at 1696.374 kb on + strand at 1696.407 kb on - strand, within PGA1_c16340 at 1696.489 kb on - strand, within PGA1_c16340 at 1696.520 kb on - strand, within PGA1_c16340 at 1696.665 kb on - strand, within PGA1_c16340 at 1696.679 kb on - strand, within PGA1_c16340 at 1696.679 kb on - strand, within PGA1_c16340 at 1696.838 kb on + strand, within PGA1_c16340 at 1696.849 kb on + strand, within PGA1_c16340 at 1696.900 kb on - strand at 1697.231 kb on + strand, within PGA1_c16350 at 1697.344 kb on - strand at 1697.415 kb on + strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.426 kb on + strand at 1697.594 kb on + strand, within PGA1_c16360 at 1697.604 kb on + strand, within PGA1_c16360 at 1697.605 kb on + strand, within PGA1_c16360 at 1697.697 kb on - strand, within PGA1_c16360 at 1697.764 kb on - strand, within PGA1_c16360 at 1697.787 kb on + strand, within PGA1_c16360
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 1,695,349 + PGA1_c16320 0.71 -0.7 1,695,374 + PGA1_c16320 0.73 +0.4 1,695,401 + PGA1_c16320 0.75 +0.7 1,695,413 + PGA1_c16320 0.76 +1.0 1,695,413 + PGA1_c16320 0.76 -1.1 1,695,424 + PGA1_c16320 0.77 -1.1 1,695,429 + PGA1_c16320 0.77 +0.1 1,695,429 + PGA1_c16320 0.77 -0.4 1,695,437 - PGA1_c16320 0.77 +1.0 1,695,540 - PGA1_c16320 0.84 +0.4 1,695,540 - PGA1_c16320 0.84 +0.8 1,695,540 - PGA1_c16320 0.84 -1.1 1,695,541 - PGA1_c16320 0.84 -0.4 1,695,611 + PGA1_c16320 0.89 +1.2 1,695,659 - -0.9 1,695,668 + +1.3 1,695,676 - +0.6 1,695,676 - +0.7 1,695,763 + +0.0 1,695,818 + -1.2 1,695,833 + +1.0 1,695,833 + -0.6 1,695,961 + -0.1 1,696,233 - -0.0 1,696,248 - +1.4 1,696,311 + +0.3 1,696,374 + -4.0 1,696,407 - PGA1_c16340 0.13 -2.1 1,696,489 - PGA1_c16340 0.27 -2.6 1,696,520 - PGA1_c16340 0.33 -2.9 1,696,665 - PGA1_c16340 0.58 -1.9 1,696,679 - PGA1_c16340 0.60 -2.1 1,696,679 - PGA1_c16340 0.60 -2.6 1,696,838 + PGA1_c16340 0.88 -1.9 1,696,849 + PGA1_c16340 0.90 +0.4 1,696,900 - +0.2 1,697,231 + PGA1_c16350 0.68 +0.3 1,697,344 - +1.0 1,697,415 + +0.1 1,697,423 - +0.4 1,697,423 - -1.9 1,697,423 - +0.8 1,697,423 - -1.0 1,697,426 + +1.1 1,697,594 + PGA1_c16360 0.37 +0.8 1,697,604 + PGA1_c16360 0.39 +0.6 1,697,605 + PGA1_c16360 0.39 -0.2 1,697,697 - PGA1_c16360 0.60 -0.3 1,697,764 - PGA1_c16360 0.76 -1.4 1,697,787 + PGA1_c16360 0.81 -0.7
Or see this region's nucleotide sequence