Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14910

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14900 and PGA1_c14910 are separated by 201 nucleotidesPGA1_c14910 and PGA1_c14920 are separated by 34 nucleotides PGA1_c14900: PGA1_c14900 - delta-aminolevulinic acid dehydratase HemB, at 1,546,948 to 1,547,946 _c14900 PGA1_c14910: PGA1_c14910 - hypothetical protein, at 1,548,148 to 1,548,672 _c14910 PGA1_c14920: PGA1_c14920 - transcription-repair-coupling factor Mfd, at 1,548,707 to 1,552,174 _c14920 Position (kb) 1548 1549Strain fitness (log2 ratio) -2 -1 0 1 2at 1548.086 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.114 kb on - strandat 1548.114 kb on - strandat 1548.131 kb on - strandat 1548.138 kb on + strandat 1548.156 kb on + strandat 1548.156 kb on - strandat 1548.181 kb on + strandat 1548.229 kb on + strand, within PGA1_c14910at 1548.236 kb on - strand, within PGA1_c14910at 1548.369 kb on + strand, within PGA1_c14910at 1548.369 kb on + strand, within PGA1_c14910at 1548.401 kb on + strand, within PGA1_c14910at 1548.409 kb on - strand, within PGA1_c14910at 1548.911 kb on + strandat 1549.016 kb on - strandat 1549.210 kb on + strand, within PGA1_c14920at 1549.213 kb on - strand, within PGA1_c14920at 1549.252 kb on - strand, within PGA1_c14920at 1549.313 kb on - strand, within PGA1_c14920at 1549.511 kb on - strand, within PGA1_c14920at 1549.521 kb on - strand, within PGA1_c14920at 1549.537 kb on + strand, within PGA1_c14920

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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1,548,086 + -1.3
1,548,106 + +0.6
1,548,106 + -0.7
1,548,106 + -0.3
1,548,106 + +0.0
1,548,106 + -0.4
1,548,106 + +0.3
1,548,106 + -2.1
1,548,106 + -0.7
1,548,114 - -0.9
1,548,114 - +1.6
1,548,131 - -0.5
1,548,138 + -0.4
1,548,156 + +0.5
1,548,156 - -0.5
1,548,181 + +0.3
1,548,229 + PGA1_c14910 0.15 +0.2
1,548,236 - PGA1_c14910 0.17 -0.5
1,548,369 + PGA1_c14910 0.42 +0.8
1,548,369 + PGA1_c14910 0.42 +0.6
1,548,401 + PGA1_c14910 0.48 -0.7
1,548,409 - PGA1_c14910 0.50 +1.9
1,548,911 + -0.4
1,549,016 - +0.6
1,549,210 + PGA1_c14920 0.15 +0.5
1,549,213 - PGA1_c14920 0.15 -0.7
1,549,252 - PGA1_c14920 0.16 +0.1
1,549,313 - PGA1_c14920 0.17 -1.1
1,549,511 - PGA1_c14920 0.23 +1.8
1,549,521 - PGA1_c14920 0.23 -0.3
1,549,537 + PGA1_c14920 0.24 +0.5

Or see this region's nucleotide sequence