Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14560

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14550 and PGA1_c14560 overlap by 11 nucleotidesPGA1_c14560 and PGA1_c14570 are separated by 108 nucleotides PGA1_c14550: PGA1_c14550 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,509,068 to 1,510,060 _c14550 PGA1_c14560: PGA1_c14560 - homoserine O-succinyltransferase MetA, at 1,510,050 to 1,510,967 _c14560 PGA1_c14570: PGA1_c14570 - hypothetical protein, at 1,511,076 to 1,511,939 _c14570 Position (kb) 1510 1511Strain fitness (log2 ratio) -2 -1 0 1 2at 1509.087 kb on + strandat 1509.159 kb on - strandat 1509.175 kb on + strand, within PGA1_c14550at 1509.175 kb on - strand, within PGA1_c14550at 1509.245 kb on - strand, within PGA1_c14550at 1509.251 kb on + strand, within PGA1_c14550at 1509.251 kb on + strand, within PGA1_c14550at 1509.251 kb on + strand, within PGA1_c14550at 1509.259 kb on - strand, within PGA1_c14550at 1509.282 kb on + strand, within PGA1_c14550at 1509.344 kb on + strand, within PGA1_c14550at 1509.352 kb on + strand, within PGA1_c14550at 1509.373 kb on + strand, within PGA1_c14550at 1509.373 kb on + strand, within PGA1_c14550at 1509.375 kb on - strand, within PGA1_c14550at 1509.376 kb on - strand, within PGA1_c14550at 1509.536 kb on - strand, within PGA1_c14550at 1509.551 kb on + strand, within PGA1_c14550at 1509.596 kb on - strand, within PGA1_c14550at 1509.611 kb on + strand, within PGA1_c14550at 1509.616 kb on + strand, within PGA1_c14550at 1509.624 kb on - strand, within PGA1_c14550at 1509.689 kb on + strand, within PGA1_c14550at 1509.741 kb on + strand, within PGA1_c14550at 1509.741 kb on + strand, within PGA1_c14550at 1509.741 kb on + strand, within PGA1_c14550at 1509.741 kb on + strand, within PGA1_c14550at 1509.749 kb on - strand, within PGA1_c14550at 1509.793 kb on + strand, within PGA1_c14550at 1509.866 kb on + strand, within PGA1_c14550at 1509.895 kb on + strand, within PGA1_c14550at 1509.959 kb on + strand, within PGA1_c14550at 1509.967 kb on - strandat 1510.000 kb on + strandat 1510.024 kb on + strandat 1510.319 kb on + strand, within PGA1_c14560at 1510.329 kb on + strand, within PGA1_c14560at 1510.589 kb on - strand, within PGA1_c14560at 1510.679 kb on - strand, within PGA1_c14560at 1510.913 kb on - strandat 1510.943 kb on + strandat 1510.951 kb on - strandat 1510.992 kb on - strandat 1511.021 kb on - strandat 1511.024 kb on + strandat 1511.048 kb on + strandat 1511.048 kb on + strandat 1511.052 kb on - strandat 1511.087 kb on + strandat 1511.095 kb on - strandat 1511.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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1,509,087 + -2.7
1,509,159 - +0.7
1,509,175 + PGA1_c14550 0.11 -0.6
1,509,175 - PGA1_c14550 0.11 -0.2
1,509,245 - PGA1_c14550 0.18 -0.0
1,509,251 + PGA1_c14550 0.18 +0.3
1,509,251 + PGA1_c14550 0.18 +0.4
1,509,251 + PGA1_c14550 0.18 +0.1
1,509,259 - PGA1_c14550 0.19 -0.5
1,509,282 + PGA1_c14550 0.22 +0.6
1,509,344 + PGA1_c14550 0.28 -0.7
1,509,352 + PGA1_c14550 0.29 +0.5
1,509,373 + PGA1_c14550 0.31 -0.5
1,509,373 + PGA1_c14550 0.31 -1.4
1,509,375 - PGA1_c14550 0.31 +0.1
1,509,376 - PGA1_c14550 0.31 +0.5
1,509,536 - PGA1_c14550 0.47 +0.6
1,509,551 + PGA1_c14550 0.49 -1.1
1,509,596 - PGA1_c14550 0.53 +0.1
1,509,611 + PGA1_c14550 0.55 -0.6
1,509,616 + PGA1_c14550 0.55 -1.0
1,509,624 - PGA1_c14550 0.56 -1.5
1,509,689 + PGA1_c14550 0.63 -1.9
1,509,741 + PGA1_c14550 0.68 -0.4
1,509,741 + PGA1_c14550 0.68 +0.8
1,509,741 + PGA1_c14550 0.68 +0.1
1,509,741 + PGA1_c14550 0.68 -0.1
1,509,749 - PGA1_c14550 0.69 +0.5
1,509,793 + PGA1_c14550 0.73 +0.1
1,509,866 + PGA1_c14550 0.80 +0.1
1,509,895 + PGA1_c14550 0.83 +0.7
1,509,959 + PGA1_c14550 0.90 -0.2
1,509,967 - -0.6
1,510,000 + -0.6
1,510,024 + -0.0
1,510,319 + PGA1_c14560 0.29 -0.1
1,510,329 + PGA1_c14560 0.30 +0.1
1,510,589 - PGA1_c14560 0.59 +0.1
1,510,679 - PGA1_c14560 0.69 +1.3
1,510,913 - +1.5
1,510,943 + -0.5
1,510,951 - -0.5
1,510,992 - +2.5
1,511,021 - -0.0
1,511,024 + -2.3
1,511,048 + +1.7
1,511,048 + +0.5
1,511,052 - +0.9
1,511,087 + -0.4
1,511,095 - +1.1
1,511,095 - -0.5

Or see this region's nucleotide sequence