Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13420

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13400 and PGA1_c13410 are separated by 103 nucleotidesPGA1_c13410 and PGA1_c13420 overlap by 4 nucleotidesPGA1_c13420 and PGA1_c13430 are separated by 37 nucleotides PGA1_c13400: PGA1_c13400 - phosphoribosylaminoimidazole-succinocarboxamide synthase PurC, at 1,384,381 to 1,385,142 _c13400 PGA1_c13410: PGA1_c13410 - phosphoribosylformylglycinamidine (FGAM) synthase PurS, at 1,385,246 to 1,385,479 _c13410 PGA1_c13420: PGA1_c13420 - phosphoribosylformylglycinamidine synthase 1, at 1,385,476 to 1,386,144 _c13420 PGA1_c13430: PGA1_c13430 - C4-dicarboxylate transport sensor protein DctB, at 1,386,182 to 1,387,951 _c13430 Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -1 0 1 2at 1384.813 kb on - strand, within PGA1_c13400at 1384.838 kb on + strand, within PGA1_c13400at 1384.968 kb on + strand, within PGA1_c13400at 1384.971 kb on - strand, within PGA1_c13400at 1384.982 kb on + strand, within PGA1_c13400at 1384.990 kb on - strand, within PGA1_c13400at 1385.008 kb on + strand, within PGA1_c13400at 1385.076 kb on + strandat 1385.304 kb on - strand, within PGA1_c13410at 1385.311 kb on - strand, within PGA1_c13410at 1385.396 kb on + strand, within PGA1_c13410at 1385.488 kb on + strandat 1385.496 kb on - strandat 1385.730 kb on + strand, within PGA1_c13420at 1386.103 kb on + strandat 1386.126 kb on + strandat 1386.199 kb on + strandat 1386.390 kb on - strand, within PGA1_c13430at 1386.529 kb on - strand, within PGA1_c13430at 1386.672 kb on + strand, within PGA1_c13430at 1386.716 kb on - strand, within PGA1_c13430at 1386.962 kb on + strand, within PGA1_c13430at 1387.109 kb on + strand, within PGA1_c13430at 1387.135 kb on - strand, within PGA1_c13430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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1,384,813 - PGA1_c13400 0.57 -1.4
1,384,838 + PGA1_c13400 0.60 +0.5
1,384,968 + PGA1_c13400 0.77 -0.1
1,384,971 - PGA1_c13400 0.77 +0.1
1,384,982 + PGA1_c13400 0.79 -0.7
1,384,990 - PGA1_c13400 0.80 +0.5
1,385,008 + PGA1_c13400 0.82 -0.0
1,385,076 + +0.1
1,385,304 - PGA1_c13410 0.25 -1.5
1,385,311 - PGA1_c13410 0.28 +0.2
1,385,396 + PGA1_c13410 0.64 -1.4
1,385,488 + +1.1
1,385,496 - +2.5
1,385,730 + PGA1_c13420 0.38 +0.7
1,386,103 + +0.8
1,386,126 + +1.0
1,386,199 + +0.7
1,386,390 - PGA1_c13430 0.12 -0.7
1,386,529 - PGA1_c13430 0.20 -0.9
1,386,672 + PGA1_c13430 0.28 +0.5
1,386,716 - PGA1_c13430 0.30 +1.2
1,386,962 + PGA1_c13430 0.44 +0.9
1,387,109 + PGA1_c13430 0.52 -1.3
1,387,135 - PGA1_c13430 0.54 -1.7

Or see this region's nucleotide sequence