Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13400 and PGA1_c13410 are separated by 103 nucleotides PGA1_c13410 and PGA1_c13420 overlap by 4 nucleotides PGA1_c13420 and PGA1_c13430 are separated by 37 nucleotides
PGA1_c13400: PGA1_c13400 - phosphoribosylaminoimidazole-succinocarboxamide synthase PurC, at 1,384,381 to 1,385,142
_c13400
PGA1_c13410: PGA1_c13410 - phosphoribosylformylglycinamidine (FGAM) synthase PurS, at 1,385,246 to 1,385,479
_c13410
PGA1_c13420: PGA1_c13420 - phosphoribosylformylglycinamidine synthase 1, at 1,385,476 to 1,386,144
_c13420
PGA1_c13430: PGA1_c13430 - C4-dicarboxylate transport sensor protein DctB, at 1,386,182 to 1,387,951
_c13430
Position (kb)
1385
1386
1387 Strain fitness (log2 ratio)
-1
0
1
2 at 1384.813 kb on - strand, within PGA1_c13400 at 1384.838 kb on + strand, within PGA1_c13400 at 1384.968 kb on + strand, within PGA1_c13400 at 1384.971 kb on - strand, within PGA1_c13400 at 1384.982 kb on + strand, within PGA1_c13400 at 1384.990 kb on - strand, within PGA1_c13400 at 1385.008 kb on + strand, within PGA1_c13400 at 1385.076 kb on + strand at 1385.304 kb on - strand, within PGA1_c13410 at 1385.311 kb on - strand, within PGA1_c13410 at 1385.396 kb on + strand, within PGA1_c13410 at 1385.488 kb on + strand at 1385.496 kb on - strand at 1385.730 kb on + strand, within PGA1_c13420 at 1386.103 kb on + strand at 1386.126 kb on + strand at 1386.199 kb on + strand at 1386.390 kb on - strand, within PGA1_c13430 at 1386.529 kb on - strand, within PGA1_c13430 at 1386.672 kb on + strand, within PGA1_c13430 at 1386.716 kb on - strand, within PGA1_c13430 at 1386.962 kb on + strand, within PGA1_c13430 at 1387.109 kb on + strand, within PGA1_c13430 at 1387.135 kb on - strand, within PGA1_c13430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 1,384,813 - PGA1_c13400 0.57 -1.4 1,384,838 + PGA1_c13400 0.60 +0.5 1,384,968 + PGA1_c13400 0.77 -0.1 1,384,971 - PGA1_c13400 0.77 +0.1 1,384,982 + PGA1_c13400 0.79 -0.7 1,384,990 - PGA1_c13400 0.80 +0.5 1,385,008 + PGA1_c13400 0.82 -0.0 1,385,076 + +0.1 1,385,304 - PGA1_c13410 0.25 -1.5 1,385,311 - PGA1_c13410 0.28 +0.2 1,385,396 + PGA1_c13410 0.64 -1.4 1,385,488 + +1.1 1,385,496 - +2.5 1,385,730 + PGA1_c13420 0.38 +0.7 1,386,103 + +0.8 1,386,126 + +1.0 1,386,199 + +0.7 1,386,390 - PGA1_c13430 0.12 -0.7 1,386,529 - PGA1_c13430 0.20 -0.9 1,386,672 + PGA1_c13430 0.28 +0.5 1,386,716 - PGA1_c13430 0.30 +1.2 1,386,962 + PGA1_c13430 0.44 +0.9 1,387,109 + PGA1_c13430 0.52 -1.3 1,387,135 - PGA1_c13430 0.54 -1.7
Or see this region's nucleotide sequence