Strain Fitness in Marinobacter adhaerens HP15 around HP15_1280

Experiment: D-Alanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1278 and HP15_1279 are separated by 11 nucleotidesHP15_1279 and HP15_1280 overlap by 4 nucleotidesHP15_1280 and HP15_1281 are separated by 2 nucleotides HP15_1278: HP15_1278 - pseudouridylate synthase, at 1,338,834 to 1,339,883 _1278 HP15_1279: HP15_1279 - stationary-phase survival protein SurE, at 1,339,895 to 1,340,665 _1279 HP15_1280: HP15_1280 - protein-L-isoaspartate (D-aspartate) O-methyltransferase, at 1,340,662 to 1,341,318 _1280 HP15_1281: HP15_1281 - membrane protein containing DUF368, at 1,341,321 to 1,342,310 _1281 Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -1 0 1at 1340.614 kb on + strandat 1340.658 kb on + strandat 1340.927 kb on + strand, within HP15_1280at 1341.016 kb on + strand, within HP15_1280at 1341.279 kb on + strandat 1342.276 kb on + strandat 1342.309 kb on + strandat 1342.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine
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1,340,614 + -0.2
1,340,658 + -0.6
1,340,927 + HP15_1280 0.40 -1.6
1,341,016 + HP15_1280 0.54 -0.2
1,341,279 + +0.9
1,342,276 + +0.3
1,342,309 + -0.6
1,342,317 - -1.4

Or see this region's nucleotide sequence