Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11970

Experiment: m.b. Aluminum chloride 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c11950 and PGA1_c11960 are separated by 141 nucleotidesPGA1_c11960 and PGA1_c11970 are separated by 207 nucleotidesPGA1_c11970 and PGA1_c11980 are separated by 90 nucleotides PGA1_c11950: PGA1_c11950 - phosphopentomutase DeoB, at 1,241,248 to 1,242,468 _c11950 PGA1_c11960: PGA1_c11960 - uracil phosphoribosyltransferase Upp, at 1,242,610 to 1,243,242 _c11960 PGA1_c11970: PGA1_c11970 - Sporulation related domain., at 1,243,450 to 1,244,772 _c11970 PGA1_c11980: PGA1_c11980 - hypothetical protein, at 1,244,863 to 1,245,873 _c11980 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1242.457 kb on - strandat 1242.463 kb on + strandat 1242.557 kb on + strandat 1242.557 kb on + strandat 1242.572 kb on + strandat 1242.572 kb on + strandat 1242.572 kb on + strandat 1242.572 kb on + strandat 1242.580 kb on - strandat 1242.580 kb on - strandat 1242.627 kb on - strandat 1242.654 kb on - strandat 1242.656 kb on + strandat 1242.765 kb on - strand, within PGA1_c11960at 1243.009 kb on + strand, within PGA1_c11960at 1243.028 kb on + strand, within PGA1_c11960at 1243.028 kb on + strand, within PGA1_c11960at 1243.050 kb on + strand, within PGA1_c11960at 1243.050 kb on + strand, within PGA1_c11960at 1243.050 kb on + strand, within PGA1_c11960at 1243.109 kb on + strand, within PGA1_c11960at 1243.109 kb on + strand, within PGA1_c11960at 1243.133 kb on + strand, within PGA1_c11960at 1243.166 kb on + strand, within PGA1_c11960at 1243.168 kb on - strand, within PGA1_c11960at 1243.194 kb on - strandat 1243.201 kb on + strandat 1243.202 kb on + strandat 1243.300 kb on + strandat 1243.305 kb on + strandat 1243.331 kb on + strandat 1243.331 kb on + strandat 1243.331 kb on + strandat 1243.331 kb on + strandat 1243.339 kb on - strandat 1243.351 kb on + strandat 1243.351 kb on + strandat 1243.522 kb on + strandat 1243.562 kb on + strandat 1243.562 kb on + strandat 1243.562 kb on + strandat 1243.562 kb on + strandat 1243.570 kb on - strandat 1243.570 kb on - strandat 1243.608 kb on - strand, within PGA1_c11970at 1243.724 kb on + strand, within PGA1_c11970at 1243.732 kb on - strand, within PGA1_c11970at 1243.793 kb on + strand, within PGA1_c11970at 1243.806 kb on - strand, within PGA1_c11970at 1243.886 kb on + strand, within PGA1_c11970at 1243.889 kb on - strand, within PGA1_c11970at 1243.936 kb on + strand, within PGA1_c11970at 1243.989 kb on + strand, within PGA1_c11970at 1244.043 kb on + strand, within PGA1_c11970at 1244.079 kb on - strand, within PGA1_c11970at 1244.095 kb on + strand, within PGA1_c11970at 1244.095 kb on + strand, within PGA1_c11970at 1244.103 kb on - strand, within PGA1_c11970at 1244.127 kb on - strand, within PGA1_c11970at 1244.161 kb on - strand, within PGA1_c11970at 1244.163 kb on + strand, within PGA1_c11970at 1244.283 kb on - strand, within PGA1_c11970at 1244.387 kb on + strand, within PGA1_c11970at 1244.463 kb on - strand, within PGA1_c11970at 1244.531 kb on - strand, within PGA1_c11970at 1244.559 kb on - strand, within PGA1_c11970at 1244.628 kb on + strand, within PGA1_c11970at 1244.658 kb on + strandat 1244.787 kb on - strandat 1244.883 kb on + strandat 1244.891 kb on - strandat 1244.990 kb on - strand, within PGA1_c11980at 1245.048 kb on - strand, within PGA1_c11980at 1245.048 kb on - strand, within PGA1_c11980at 1245.099 kb on - strand, within PGA1_c11980at 1245.119 kb on - strand, within PGA1_c11980at 1245.263 kb on - strand, within PGA1_c11980at 1245.288 kb on + strand, within PGA1_c11980at 1245.296 kb on - strand, within PGA1_c11980at 1245.374 kb on + strand, within PGA1_c11980at 1245.399 kb on - strand, within PGA1_c11980at 1245.430 kb on - strand, within PGA1_c11980at 1245.472 kb on - strand, within PGA1_c11980at 1245.481 kb on - strand, within PGA1_c11980at 1245.533 kb on + strand, within PGA1_c11980at 1245.541 kb on - strand, within PGA1_c11980at 1245.551 kb on - strand, within PGA1_c11980at 1245.551 kb on - strand, within PGA1_c11980at 1245.763 kb on + strand, within PGA1_c11980at 1245.771 kb on - strand, within PGA1_c11980at 1245.771 kb on - strand, within PGA1_c11980at 1245.771 kb on - strand, within PGA1_c11980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
remove
1,242,457 - -0.0
1,242,463 + -0.5
1,242,557 + +0.6
1,242,557 + +0.1
1,242,572 + +0.9
1,242,572 + -0.1
1,242,572 + -0.2
1,242,572 + +1.5
1,242,580 - +0.0
1,242,580 - +1.6
1,242,627 - -0.0
1,242,654 - -0.3
1,242,656 + -0.2
1,242,765 - PGA1_c11960 0.24 -0.1
1,243,009 + PGA1_c11960 0.63 +0.1
1,243,028 + PGA1_c11960 0.66 -0.0
1,243,028 + PGA1_c11960 0.66 -2.7
1,243,050 + PGA1_c11960 0.70 -0.4
1,243,050 + PGA1_c11960 0.70 -0.0
1,243,050 + PGA1_c11960 0.70 -1.3
1,243,109 + PGA1_c11960 0.79 +1.0
1,243,109 + PGA1_c11960 0.79 +0.4
1,243,133 + PGA1_c11960 0.83 -0.4
1,243,166 + PGA1_c11960 0.88 -0.9
1,243,168 - PGA1_c11960 0.88 +0.3
1,243,194 - +0.5
1,243,201 + -1.1
1,243,202 + -0.8
1,243,300 + +0.6
1,243,305 + +0.8
1,243,331 + -0.1
1,243,331 + -0.1
1,243,331 + -2.1
1,243,331 + -1.1
1,243,339 - -1.1
1,243,351 + +1.2
1,243,351 + -1.0
1,243,522 + +0.2
1,243,562 + +1.2
1,243,562 + +2.1
1,243,562 + -1.3
1,243,562 + +0.0
1,243,570 - +0.7
1,243,570 - -0.3
1,243,608 - PGA1_c11970 0.12 -0.5
1,243,724 + PGA1_c11970 0.21 +0.9
1,243,732 - PGA1_c11970 0.21 -0.3
1,243,793 + PGA1_c11970 0.26 +0.4
1,243,806 - PGA1_c11970 0.27 +0.5
1,243,886 + PGA1_c11970 0.33 +0.3
1,243,889 - PGA1_c11970 0.33 -1.4
1,243,936 + PGA1_c11970 0.37 +1.5
1,243,989 + PGA1_c11970 0.41 +2.0
1,244,043 + PGA1_c11970 0.45 +0.6
1,244,079 - PGA1_c11970 0.48 -1.3
1,244,095 + PGA1_c11970 0.49 +1.8
1,244,095 + PGA1_c11970 0.49 +0.2
1,244,103 - PGA1_c11970 0.49 +0.4
1,244,127 - PGA1_c11970 0.51 +0.8
1,244,161 - PGA1_c11970 0.54 +0.0
1,244,163 + PGA1_c11970 0.54 -0.1
1,244,283 - PGA1_c11970 0.63 +1.3
1,244,387 + PGA1_c11970 0.71 -0.3
1,244,463 - PGA1_c11970 0.77 +0.9
1,244,531 - PGA1_c11970 0.82 +1.1
1,244,559 - PGA1_c11970 0.84 -0.1
1,244,628 + PGA1_c11970 0.89 +1.1
1,244,658 + -1.0
1,244,787 - +0.5
1,244,883 + -0.4
1,244,891 - -1.8
1,244,990 - PGA1_c11980 0.13 -3.0
1,245,048 - PGA1_c11980 0.18 -1.8
1,245,048 - PGA1_c11980 0.18 -0.5
1,245,099 - PGA1_c11980 0.23 -1.8
1,245,119 - PGA1_c11980 0.25 +0.5
1,245,263 - PGA1_c11980 0.40 -2.1
1,245,288 + PGA1_c11980 0.42 -2.3
1,245,296 - PGA1_c11980 0.43 -1.5
1,245,374 + PGA1_c11980 0.51 -2.4
1,245,399 - PGA1_c11980 0.53 -1.8
1,245,430 - PGA1_c11980 0.56 -3.9
1,245,472 - PGA1_c11980 0.60 -1.5
1,245,481 - PGA1_c11980 0.61 -2.8
1,245,533 + PGA1_c11980 0.66 -2.5
1,245,541 - PGA1_c11980 0.67 -1.1
1,245,551 - PGA1_c11980 0.68 -3.7
1,245,551 - PGA1_c11980 0.68 -1.5
1,245,763 + PGA1_c11980 0.89 -2.0
1,245,771 - PGA1_c11980 0.90 -1.8
1,245,771 - PGA1_c11980 0.90 -1.2
1,245,771 - PGA1_c11980 0.90 -1.5

Or see this region's nucleotide sequence