Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11950 and PGA1_c11960 are separated by 141 nucleotides PGA1_c11960 and PGA1_c11970 are separated by 207 nucleotides PGA1_c11970 and PGA1_c11980 are separated by 90 nucleotides
PGA1_c11950: PGA1_c11950 - phosphopentomutase DeoB, at 1,241,248 to 1,242,468
_c11950
PGA1_c11960: PGA1_c11960 - uracil phosphoribosyltransferase Upp, at 1,242,610 to 1,243,242
_c11960
PGA1_c11970: PGA1_c11970 - Sporulation related domain., at 1,243,450 to 1,244,772
_c11970
PGA1_c11980: PGA1_c11980 - hypothetical protein, at 1,244,863 to 1,245,873
_c11980
Position (kb)
1243
1244
1245 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1242.457 kb on - strand at 1242.463 kb on + strand at 1242.557 kb on + strand at 1242.557 kb on + strand at 1242.572 kb on + strand at 1242.572 kb on + strand at 1242.572 kb on + strand at 1242.572 kb on + strand at 1242.580 kb on - strand at 1242.580 kb on - strand at 1242.627 kb on - strand at 1242.654 kb on - strand at 1242.656 kb on + strand at 1242.765 kb on - strand, within PGA1_c11960 at 1243.009 kb on + strand, within PGA1_c11960 at 1243.028 kb on + strand, within PGA1_c11960 at 1243.028 kb on + strand, within PGA1_c11960 at 1243.050 kb on + strand, within PGA1_c11960 at 1243.050 kb on + strand, within PGA1_c11960 at 1243.050 kb on + strand, within PGA1_c11960 at 1243.109 kb on + strand, within PGA1_c11960 at 1243.109 kb on + strand, within PGA1_c11960 at 1243.133 kb on + strand, within PGA1_c11960 at 1243.166 kb on + strand, within PGA1_c11960 at 1243.168 kb on - strand, within PGA1_c11960 at 1243.194 kb on - strand at 1243.201 kb on + strand at 1243.202 kb on + strand at 1243.300 kb on + strand at 1243.305 kb on + strand at 1243.331 kb on + strand at 1243.331 kb on + strand at 1243.331 kb on + strand at 1243.331 kb on + strand at 1243.339 kb on - strand at 1243.351 kb on + strand at 1243.351 kb on + strand at 1243.522 kb on + strand at 1243.562 kb on + strand at 1243.562 kb on + strand at 1243.562 kb on + strand at 1243.562 kb on + strand at 1243.570 kb on - strand at 1243.570 kb on - strand at 1243.608 kb on - strand, within PGA1_c11970 at 1243.724 kb on + strand, within PGA1_c11970 at 1243.732 kb on - strand, within PGA1_c11970 at 1243.793 kb on + strand, within PGA1_c11970 at 1243.806 kb on - strand, within PGA1_c11970 at 1243.886 kb on + strand, within PGA1_c11970 at 1243.889 kb on - strand, within PGA1_c11970 at 1243.936 kb on + strand, within PGA1_c11970 at 1243.989 kb on + strand, within PGA1_c11970 at 1244.043 kb on + strand, within PGA1_c11970 at 1244.079 kb on - strand, within PGA1_c11970 at 1244.095 kb on + strand, within PGA1_c11970 at 1244.095 kb on + strand, within PGA1_c11970 at 1244.103 kb on - strand, within PGA1_c11970 at 1244.127 kb on - strand, within PGA1_c11970 at 1244.161 kb on - strand, within PGA1_c11970 at 1244.163 kb on + strand, within PGA1_c11970 at 1244.283 kb on - strand, within PGA1_c11970 at 1244.387 kb on + strand, within PGA1_c11970 at 1244.463 kb on - strand, within PGA1_c11970 at 1244.531 kb on - strand, within PGA1_c11970 at 1244.559 kb on - strand, within PGA1_c11970 at 1244.628 kb on + strand, within PGA1_c11970 at 1244.658 kb on + strand at 1244.787 kb on - strand at 1244.883 kb on + strand at 1244.891 kb on - strand at 1244.990 kb on - strand, within PGA1_c11980 at 1245.048 kb on - strand, within PGA1_c11980 at 1245.048 kb on - strand, within PGA1_c11980 at 1245.099 kb on - strand, within PGA1_c11980 at 1245.119 kb on - strand, within PGA1_c11980 at 1245.263 kb on - strand, within PGA1_c11980 at 1245.288 kb on + strand, within PGA1_c11980 at 1245.296 kb on - strand, within PGA1_c11980 at 1245.374 kb on + strand, within PGA1_c11980 at 1245.399 kb on - strand, within PGA1_c11980 at 1245.430 kb on - strand, within PGA1_c11980 at 1245.472 kb on - strand, within PGA1_c11980 at 1245.481 kb on - strand, within PGA1_c11980 at 1245.533 kb on + strand, within PGA1_c11980 at 1245.541 kb on - strand, within PGA1_c11980 at 1245.551 kb on - strand, within PGA1_c11980 at 1245.551 kb on - strand, within PGA1_c11980 at 1245.763 kb on + strand, within PGA1_c11980 at 1245.771 kb on - strand, within PGA1_c11980 at 1245.771 kb on - strand, within PGA1_c11980 at 1245.771 kb on - strand, within PGA1_c11980
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 1,242,457 - -0.0 1,242,463 + -0.5 1,242,557 + +0.6 1,242,557 + +0.1 1,242,572 + +0.9 1,242,572 + -0.1 1,242,572 + -0.2 1,242,572 + +1.5 1,242,580 - +0.0 1,242,580 - +1.6 1,242,627 - -0.0 1,242,654 - -0.3 1,242,656 + -0.2 1,242,765 - PGA1_c11960 0.24 -0.1 1,243,009 + PGA1_c11960 0.63 +0.1 1,243,028 + PGA1_c11960 0.66 -0.0 1,243,028 + PGA1_c11960 0.66 -2.7 1,243,050 + PGA1_c11960 0.70 -0.4 1,243,050 + PGA1_c11960 0.70 -0.0 1,243,050 + PGA1_c11960 0.70 -1.3 1,243,109 + PGA1_c11960 0.79 +1.0 1,243,109 + PGA1_c11960 0.79 +0.4 1,243,133 + PGA1_c11960 0.83 -0.4 1,243,166 + PGA1_c11960 0.88 -0.9 1,243,168 - PGA1_c11960 0.88 +0.3 1,243,194 - +0.5 1,243,201 + -1.1 1,243,202 + -0.8 1,243,300 + +0.6 1,243,305 + +0.8 1,243,331 + -0.1 1,243,331 + -0.1 1,243,331 + -2.1 1,243,331 + -1.1 1,243,339 - -1.1 1,243,351 + +1.2 1,243,351 + -1.0 1,243,522 + +0.2 1,243,562 + +1.2 1,243,562 + +2.1 1,243,562 + -1.3 1,243,562 + +0.0 1,243,570 - +0.7 1,243,570 - -0.3 1,243,608 - PGA1_c11970 0.12 -0.5 1,243,724 + PGA1_c11970 0.21 +0.9 1,243,732 - PGA1_c11970 0.21 -0.3 1,243,793 + PGA1_c11970 0.26 +0.4 1,243,806 - PGA1_c11970 0.27 +0.5 1,243,886 + PGA1_c11970 0.33 +0.3 1,243,889 - PGA1_c11970 0.33 -1.4 1,243,936 + PGA1_c11970 0.37 +1.5 1,243,989 + PGA1_c11970 0.41 +2.0 1,244,043 + PGA1_c11970 0.45 +0.6 1,244,079 - PGA1_c11970 0.48 -1.3 1,244,095 + PGA1_c11970 0.49 +1.8 1,244,095 + PGA1_c11970 0.49 +0.2 1,244,103 - PGA1_c11970 0.49 +0.4 1,244,127 - PGA1_c11970 0.51 +0.8 1,244,161 - PGA1_c11970 0.54 +0.0 1,244,163 + PGA1_c11970 0.54 -0.1 1,244,283 - PGA1_c11970 0.63 +1.3 1,244,387 + PGA1_c11970 0.71 -0.3 1,244,463 - PGA1_c11970 0.77 +0.9 1,244,531 - PGA1_c11970 0.82 +1.1 1,244,559 - PGA1_c11970 0.84 -0.1 1,244,628 + PGA1_c11970 0.89 +1.1 1,244,658 + -1.0 1,244,787 - +0.5 1,244,883 + -0.4 1,244,891 - -1.8 1,244,990 - PGA1_c11980 0.13 -3.0 1,245,048 - PGA1_c11980 0.18 -1.8 1,245,048 - PGA1_c11980 0.18 -0.5 1,245,099 - PGA1_c11980 0.23 -1.8 1,245,119 - PGA1_c11980 0.25 +0.5 1,245,263 - PGA1_c11980 0.40 -2.1 1,245,288 + PGA1_c11980 0.42 -2.3 1,245,296 - PGA1_c11980 0.43 -1.5 1,245,374 + PGA1_c11980 0.51 -2.4 1,245,399 - PGA1_c11980 0.53 -1.8 1,245,430 - PGA1_c11980 0.56 -3.9 1,245,472 - PGA1_c11980 0.60 -1.5 1,245,481 - PGA1_c11980 0.61 -2.8 1,245,533 + PGA1_c11980 0.66 -2.5 1,245,541 - PGA1_c11980 0.67 -1.1 1,245,551 - PGA1_c11980 0.68 -3.7 1,245,551 - PGA1_c11980 0.68 -1.5 1,245,763 + PGA1_c11980 0.89 -2.0 1,245,771 - PGA1_c11980 0.90 -1.8 1,245,771 - PGA1_c11980 0.90 -1.2 1,245,771 - PGA1_c11980 0.90 -1.5
Or see this region's nucleotide sequence